RetrogeneDB ID: retro_ogar_2098

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873590.1:7513453..7514052(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: SLC25A33
• Ensembl ID: ENSOGAG00000007103
• Aliases: None
• Description: solute carrier family 25 (pyrimidine nucleotide carrier), member 33 [Source:HGNC Symbol;Acc:29681]

Sequence

>retro_ogar_2098
AGATTAGCTCCCTGCACATTCTATTATCCTCAGGTTCATCTGGGGACCATTTTGGAGGTAGAATGGTGAGACCAAAATGT
GTGACACCTAGATTCTTTCAGATTTTGAAGTGAATCTTGAAGGAGGGACCAGAGTCACATTTTAGAAGCTCAGGTCCAGA
TTTGGCTGGAGTTGACCATCAAGGGCGTGTACTTTGCACATTACTGCAAAGCCAAAGAGCAATTGAATGGCATTTTCACG
TCTAATTGTCAAGTTTGTGCATATGTTCCAGCTGCCTCCAGCAGCTTTTATCACAAATTCCATAATGAATCCTGTATGGT
TAAAACCCTGCTGCAGCTAGGATGGGAGGTGAGGGCTCCGGGCAGACAGATGCAGTCCTATGCACGCCTTACATGTCCAG
ACAGGGCATTCGTGGCTTCTGTGGAACATTAACTGCTTCATGGGTTGGAATTCCATAAACTATAATCTGTTTGGCTATTT
ATGGAAATATAAAGAAGTATCTGAAAGAAGCTCCATTAGCCTCTTCTGCAAATGGGACTAAGAAAAATTCCACGAAGTTT
TTTGGACTCATGGCAGCTGAGGGATGTGCCTCTTGTATC

Alignment

ORF - retro_ogar_2098 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 58.49 %
• Parental protein coverage: 64.8 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 4

Retrocopy - Parental Gene Alignment:

Parental  RLALRTVYYPQVHLGTIS-GAGMVRPTSVTPGLFQVLKSILEKEGPKSLFRGLGPNLVGVA-PSRA-VYF
          RLA..T.YYPQVHLGTI..G..MVRP..VTP..FQ.LK.IL.KEGP.S.FR..GP.L.GV..PSRA.VYF
Retrocopy RLAPCTFYYPQVHLGTIL<GGRMVRPKCVTPRFFQILK*IL-KEGPESHFRSSGPDLAGVD<PSRA<VYF

Parental  ACYSKAKEQFNGIFVPNSNIVHIFSAGSAAFITNSLMNPIWMVKTRMQLERKVR-GSKQMNTLQCARYVY
          A.Y.KAKEQ.NGIF..N........A.S..F......N...MVKT..QL...VR.GS.Q.....C..Y..
Retrocopy AHYCKAKEQLNGIFTSNCQVCAYVPAASSSFY-HKFHNESCMVKTLLQLGWEVR<GSGQTDAVLCTPYMS

Parental  QTEGIRGFYRGLTASYAGISETIICFAIYESLKKYLQEEPLASSTNGTEKNSTNFFGLMAAAAISKGCAS
          ...GIRGF...LTAS..GI..TIIC.AIY...KKYL.E.PLASS.NGT.KNST.FFGLMAA.....GCAS
Retrocopy R-QGIRGFCGTLTASWVGIP*TIICLAIYGNIKKYLKEAPLASSANGTKKNSTKFFGLMAA----EGCAS

Parental  CI
          CI
Retrocopy CI

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_2098 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 6 parental genes, and 6 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000000424	1 retrocopy	retro_cjac_2186,
Dasypus novemcinctus	ENSDNOG00000014396	1 retrocopy	retro_dnov_2369,
Homo sapiens	ENSG00000171612	1 retrocopy	retro_hsap_873,
Gorilla gorilla	ENSGGOG00000006766	1 retrocopy	retro_ggor_709,
Monodelphis domestica	ENSMODG00000003059	1 retrocopy	retro_mdom_1512,
Otolemur garnettii	ENSOGAG00000007103	1 retrocopy	retro_ogar_2098 ,