RetrogeneDB ID: retro_ogar_1605

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873555.1:8991450..8991860(+)
• Located in intron of: ENSOGAG00000000251

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: CCDC152
• Ensembl ID: ENSOGAG00000012867
• Aliases: None
• Description: coiled-coil domain containing 152 [Source:HGNC Symbol;Acc:34438]

Sequence

>retro_ogar_1605
AAAAGTCTACAAAAAATGGGCAAGAAAATAATAGAAACCAGTAGAATGAACAATATACTGTATATTCAGTTGGAAAAGAA
TAATGGTTTACCAAAAGTAATGCAAACAAAGGAGGTTTCAATTAAAGAAGAATGTGCTACTCTTCATAGTATGATAAAAT
GACTACAACGGACCATTGACTATCAACACAATTTGAAAGATGAAAATGAACAACTAAAAAGAAGTGTTGATCTTATAAAA
GAGCAGTTAAAATCTCATGGACAGAACTGTAAGAATAATATTGCCAAACTTGTGAGTGAAATGAAAATAAAGAGGAGGGA
TATAAGATAGAAATGAGCAAACTTTATCAGGACATGCAGAAAAAAATTGAATTAAATGAAGAAAAGTACTAAGAACTAAT
AAAAAGGAAA

Alignment

ORF - retro_ogar_1605 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 74.64 %
• Parental protein coverage: 53.94 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  RDFSQIEKKMIETSGKNNMLDIQLEKTNSLLKVMQTKEVSIKEECATLHSMVKGLQQTIEYQHNLKNENE
          .......KK.IETS..NN.L.IQLEK.N.L.KVMQTKEVSIKEECATLHSM.K.LQ.TI.YQHNLK.ENE
Retrocopy KSLQKMGKKIIETSRMNNILYIQLEKNNGLPKVMQTKEVSIKEECATLHSMIK*LQRTIDYQHNLKDENE

Parental  QLKRNADLIKEKLKSHEQEHKDNIAKLMSEMKI-KEEGHKIEMSKLYQDMQKKIELCEEKHKELIGKK
          QLKR..DLIKE.LKSH.Q..K.NIAKL.SEMKI.KEEG.KIEMSKLYQDMQKKIEL.EEK..ELI..K
Retrocopy QLKRSVDLIKEQLKSHGQNCKNNIAKLVSEMKI<KEEGYKIEMSKLYQDMQKKIELNEEKY*ELIKRK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_1605 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Cavia porcellus	ENSCPOG00000002761	2 retrocopies	retro_cpor_311, retro_cpor_638,
Mustela putorius furo	ENSMPUG00000014443	1 retrocopy	retro_mputfur_1496,
Otolemur garnettii	ENSOGAG00000012867	1 retrocopy	retro_ogar_1605 ,