RetrogeneDB ID: retro_ogar_1577

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873552.1:9401110..9402070(-)
• Located in intron of: ENSOGAG00000014841

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSOGAG00000014463
• Aliases: None
• Description: None

Sequence

>retro_ogar_1577
ATGCCGACCGGAGACTTTGATTTGAAGCCAAGCTGGGCTGACCAGGTGGAAGAGGAGGGAGAGGACGACAAATGTGTCAC
CAGTGAGCTCCTCACGGGGCTCCCTCTGATCACTGGAGACACCAGCCCAGAGCCCAAGCTACTGCCCGGAGCTCCACTGC
CACCTCCCAAGGAGGTCATCAATGGCAACATAAAGACAGTGACCGAGTACAAGATAGATGATGATGGCAAGAAGTTCAAT
ATTGTCTGCACCTTCAGGATTGAGACACGGAAGGTCTCCAAGGCAGTTGCGAGGAGGAAGAACTAGAAGAAGTTTGGGAA
CTCAGAGTTTGACCCCCCAGGGCCCGATGTGGCCACCACTACTGTTAGTGATGATGTCTCTATGACATTCATCACCAGCA
AAAAGGACCTGAACTGCCAGGAGGAGGAGGACCCAATGAACAAAGTCAAGGGCCAGAAGATAGTGTCCTGCCGCATCTGC
AAGGGAGACCACTGGACCACCCATTGCCCCTACAAGGACACCTTGGGGCCCATGCAGAAGGAACTAGAGGAGCAGCTGGG
CCTGTCCACTGGCGAGAAAGAAAAGCTGCCAGGAGAGCTGGAGCTTGTGCAGGCAGCTCAGAACAAGACAGAGAAATACA
TACCACCAAGCCTTCGGGATGGGGCCAGCCGCCGTGGGGAGTCTATGCAGCCTAACTGTAGAGCTGATGACAATGCCACC
ATCCGTGTCACCAACTTGTCAGAGGACACACGTGAGACCGACCTACAGGAGCTCTTCCGGCCCTTTGGCTCCATCTCCCG
CATCTACCTGGCTAAGGACAAGACCACTGGCCAGTCCAAGGGCTTTGCCTTCATAAGCTTCCACTGCTGTGAGGATGCTG
CACGTGCCGTTGCTGGGGTATCTGGCTTTGGCTACGATCATCTCATCCTCAATATTGAGTGGGCCAAGCCATCTACCAAC

Alignment

ORF - retro_ogar_1577 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 93.44 %
• Parental protein coverage: 100.0 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MPTGDFDSKPSWADQVEEEGEDDKCVTSELLKGLPLATGDTSPEPDLLPGAPLPPPKEVINGNIKTVTEY
          MPTGDFD.KPSWADQVEEEGEDDKCVTSELL.GLPL.TGDTSPEP.LLPGAPLPPPKEVINGNIKTVTEY
Retrocopy MPTGDFDLKPSWADQVEEEGEDDKCVTSELLTGLPLITGDTSPEPKLLPGAPLPPPKEVINGNIKTVTEY

Parental  KIDDDGKKFKIVRTFRIETRKASKAVARRKNWKKFGNSEFDPPGPNVATTTVSDDVSMTFITSKEDLNCQ
          KIDDDGKKF.IV.TFRIETRK.SKAVARRKN.KKFGNSEFDPPGP.VATTTVSDDVSMTFITSK.DLNCQ
Retrocopy KIDDDGKKFNIVCTFRIETRKVSKAVARRKN*KKFGNSEFDPPGPDVATTTVSDDVSMTFITSKKDLNCQ

Parental  EEEDPMNKLKGQKIVSCRICKGDHWTTRCPYKDTLGPMQKELAEQLGLSTGEKEKLPGELEPVQAAQNKT
          EEEDPMNK.KGQKIVSCRICKGDHWTT.CPYKDTLGPMQKEL.EQLGLSTGEKEKLPGELE.VQAAQNKT
Retrocopy EEEDPMNKVKGQKIVSCRICKGDHWTTHCPYKDTLGPMQKELEEQLGLSTGEKEKLPGELELVQAAQNKT

Parental  GKYVPPSLRDGASRRGESMQPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSK
          .KY.PPSLRDGASRRGESMQPN.RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSK
Retrocopy EKYIPPSLRDGASRRGESMQPNCRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSK

Parental  GFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAKPSTN
          GFAFISFH..EDAARA.AGVSGFGYDHLILN.EWAKPSTN
Retrocopy GFAFISFHCCEDAARAVAGVSGFGYDHLILNIEWAKPSTN

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_1577 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 6 retrocopies.

Species	Parental gene accession	Retrocopies number
Equus caballus	ENSECAG00000021436	1 retrocopy	retro_ecab_713,
Myotis lucifugus	ENSMLUG00000014196	1 retrocopy	retro_mluc_2407,
Otolemur garnettii	ENSOGAG00000014463	3 retrocopies	retro_ogar_101, retro_ogar_1577 , retro_ogar_1661,
Rattus norvegicus	ENSRNOG00000020619	1 retrocopy	retro_rnor_1731,