RetrogeneDB ID: retro_ogar_155

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873566.1:841422..842706(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSOGAG00000029626
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSOGAG00000010280
• Aliases: None
• Description: None

Sequence

>retro_ogar_155
ATGGCAGAGCAGCACGTAAAAAACGAACTTTCGGATTATGAGGAAGATGAAGAACTCCAGGCTCCTCCGGAGAGCACTCC
AGCTCCCCCTAAGAAAGACGTCAAAGGATCTTATGTTTGCATCCATAGCTCTGGATTCCGGGACTTTCTGCTGAAGCCAG
AGCTCCTGAGAGCCATTGTGGACTGTGGCTTTGAGCATCCGTCTGAGGTCCAGCACGAGTGCATTCCACAGGCCATCCTG
GGCCTGGACGTCCTGTGCCAGGCCAGGTCTGGGATGGGCAAGACAGCAGTTTTTGTGCTGGCCACCCTGCAACAGATCGA
GCCCATCAACGGACAGGTGACAGTCTTGGTCATGTGTCATACCAGAGAGCTGGCCTTCCAGATCAGCAAGGAATATGAGG
GCTTCTCCAAGTACATGCCCAGCGTCAAGGTGTCTGTCTTCTTTGGTGGCCTCTCCATCAGGAAAGATGAAAAAGTATTG
AAGAAAAACTGTCCCCATGTTGTGGTGGGGACCCCGGGCCGGATCCTGGCCCTCGTGCGGAACAGGAGCCTCAACCTGAA
GAACGTGAAGCACTTTGTGCTGGACGAGTGTGACAAGATGCTGGAGCGGCCGGACATGCGGCGGCATGTGTGGGAGATCT
TCCGCCTGACGCCCCGCGAGAAGCAGTGCATGATGTTCAGCGCTACCCTGAGCCAGGAGATCCGCCCTGTCTGCAGGAAG
TTCATGCAGGATCCGATGGAGGTGTTTGCGGATGACGAGATCAAGCTCACGCTGCGTGGACTACAGCAGTTCTACGTCAA
GCTCCGGGGCAGTGAGAAGAACCGCAAACTCTCTGATCTCTTGGAAGTGCTGGAGTTTGACCAGGTGGTCATCTTTGTCA
CGTCCATGCAGCGCTGCATGGCCCTGGCCCAGCTCCTCGTGGGACAGAACTTCCCAGCCGTTGCCATCCACCGGGGCATG
GCCCAGGAGGAGCGCCGGTCACGCTATCAGCAGTTCAAGGGTTTCCAGCAGCGGATCCTGGTGGCCACCGATCTGTTTGG
CCGAGGGATGGATATTGAGCCAGTCGACATTGTCTTCAACTATGACATGCCGGAGGACTCTGACACCTACCTCCACCGGG
TGGCCCGGGCGGGTCGCTTTGGCACCAAAGGCCTGGCCTTCACTTTTGTGTCTGACGAGAATGATGCCAAAATACTCAAG
GATGTTCAGGATCGGTTTGGGGTGAATGTGGCAGAATTTCCAGAGGAAATTGCTATCTCCACATACATTAAGCAGAGCTG
GTAA

Alignment

ORF - retro_ogar_155 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 90.14 %
• Parental protein coverage: 99.77 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MAEQDVENELLDYEEDEEPQAPPESTPAPPKKDVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEV
          MAEQ.V.NEL.DYEEDEE.QAPPESTPAPPKKDVKGSYV.IHSSGFRDFLLKPELLRAIVDCGFEHPSEV
Retrocopy MAEQHVKNELSDYEEDEELQAPPESTPAPPKKDVKGSYVCIHSSGFRDFLLKPELLRAIVDCGFEHPSEV

Parental  QHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVNGQVTVLVMCHTRELAFQISKEYERFSKYMP
          QHECIPQAILG.DVLCQA.SGMGKTAVFVLATLQQIEP.NGQVTVLVMCHTRELAFQISKEYE.FSKYMP
Retrocopy QHECIPQAILGLDVLCQARSGMGKTAVFVLATLQQIEPINGQVTVLVMCHTRELAFQISKEYEGFSKYMP

Parental  SVKVSVFFGGLSIKKDEEVLKKNCPHVVVGTPGRILALVRNRSLNLKNVKHFVLDECDKMLEQLDMRRDV
          SVKVSVFFGGLSI.KDE.VLKKNCPHVVVGTPGRILALVRNRSLNLKNVKHFVLDECDKMLE..DMRR.V
Retrocopy SVKVSVFFGGLSIRKDEKVLKKNCPHVVVGTPGRILALVRNRSLNLKNVKHFVLDECDKMLERPDMRRHV

Parental  QEIFRLTPHEKQCMMFSATLSKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDSEKNRKLFDL
          .EIFRLTP.EKQCMMFSATLS.EIRPVCRKFMQDPMEVF.DDE.KLTL.GLQQ.YVKL..SEKNRKL.DL
Retrocopy WEIFRLTPREKQCMMFSATLSQEIRPVCRKFMQDPMEVFADDEIKLTLRGLQQFYVKLRGSEKNRKLSDL

Parental  LDVLEFNQVVIFVKSVQRCMALAQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNLFGRGM
          L.VLEF.QVVIFV.S.QRCMALAQLLV.QNFPA.AIHRGMAQEER.SRYQQFK.FQ.RILVAT.LFGRGM
Retrocopy LEVLEFDQVVIFVTSMQRCMALAQLLVGQNFPAVAIHRGMAQEERRSRYQQFKGFQQRILVATDLFGRGM

Parental  DIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNVAELPEEIDIS
          DIE.V.IVFNYDMPEDSDTYLHRVARAGRFGTKGLA.TFVSDENDAKIL.DVQDRF.VNVAE.PEEI.IS
Retrocopy DIEPVDIVFNYDMPEDSDTYLHRVARAGRFGTKGLAFTFVSDENDAKILKDVQDRFGVNVAEFPEEIAIS

Parental  TYIEQS
          TYI.QS
Retrocopy TYIKQS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_155 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Monodelphis domestica	ENSMODG00000002448	1 retrocopy	retro_mdom_357,
Otolemur garnettii	ENSOGAG00000010280	2 retrocopies	retro_ogar_147, retro_ogar_155 ,
Otolemur garnettii	ENSOGAG00000010503	1 retrocopy	retro_ogar_3051,