RetrogeneDB ID: retro_ogar_147

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873542.1:9815975..9817238(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSOGAG00000025638
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSOGAG00000010280
• Aliases: None
• Description: None

Sequence

>retro_ogar_147
CAGAGCAGGGTAGAAAACAAACTTTTGGATTACGAGGAAGATGAAGAACCCCAGGCTCCTCCAGCTCCCCCTAAGAAAGA
CGTCAAGGGAGCCTATGTTTCCATCCATAGCTTTGGCTTCCGGGACTTTCTGCTGAAGCCAGAGCTCCTGAGGGCCATTG
GGGACTGTGGCTTTGAGCATCCGTCTGAGGTCCAGCACGAGTGCATTCCACAGGCCATTCTGGGCATGGACGGCCTGTGC
CAGGCCAAGTCTGGCATGGGCAAGACAGCAGTGTTTGTGCTGGCCACCCTGCAACAGATCGAGCCCGTCAACGGACAGGT
GACAGTCTTGGTCATGTGCCATTGGGAGCTGGCCTTCCAGATCAGCAAGGAATATGAGCACTTCTCCAAGTACATGCCCA
GTGTCAAGGTATCTGTCTTCTCCGGTGGCCTCTCCATCAAGAAAGATGAAAAAGTATTGAAGAAAAGCTGTCCCCATGTT
GTGGTGGGGACCCCGGGGCGGATCCTGGCCCTTGTGCGGCACAGGAGCCTCAACCTGAAGAACGTGAAGCACTTTGTGCT
GGACGAGTGTGACAAGATGCTGGAGCGGCTGGACATGCGGCAGGACGTGCAGGAGATCTTCTGCCTGACGCCCCGAGAGA
AGCAGTGCATGATGTTCAGTGCCACCCTGAGCCAGGAGATCCGCCCTGTCTGCAGGAAGTTCATGCAGGATCCCATGGAG
GTGTTTGTGGATGAGGAGCCCAAGCTCACGCTGCAAGGACTACAGCAGTACTATGTCAAACTCCAGAGCAGTAAGAAGAA
CCGCCAACTCTTTGATCTCTTGGATGTGCTAGAGTTTGACCAGGTGGTCATCTCTGTCAAGTCCATGCAGTGCTGCATGG
CCCTGGCCCAGGTCCTCATGGGACAGAACTTCCCAGCGGTTGCCATCCACTGGGGCACGGCCCAGGAGGAGCGCCTGTCA
CGCTATCAGCAGTTCAAGGATTTCCAGCTGCAGATCCTGGTGGCCACCAATCTGTTTGGCCAAGGGATGGACACTGAGCG
AGTCGACATTGTCTTCAACTATGACATGCCTGAGGACTCTGACACCTACCTCCACCGGGTGGCCCGGGCGGGTTGCTTTG
GCACCAAAGGCCTGGCCATCACTTTTGTGTCTGATCAGAATGATGCCAAAGTCCTCAATGATGTCCAGGACCGGTTTGAG
GTGAATGTGGCAGAACTTCCAGAGGAAATCGCTATCTCCACATACATGGAGCAGAGCTGGTAA

Alignment

ORF - retro_ogar_147 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 88.6 %
• Parental protein coverage: 98.59 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  VENELLDYEEDEEPQAPPESTPAPPKKDVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECI
          VEN.LLDYEEDEEPQAP....PAPPKKDVKG.YVSIHS.GFRDFLLKPELLRAI.DCGFEHPSEVQHECI
Retrocopy VENKLLDYEEDEEPQAP----PAPPKKDVKGAYVSIHSFGFRDFLLKPELLRAIGDCGFEHPSEVQHECI

Parental  PQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVNGQVTVLVMCHTRELAFQISKEYERFSKYMPSVKVS
          PQAILGMD.LCQAKSGMGKTAVFVLATLQQIEPVNGQVTVLVMCH..ELAFQISKEYE.FSKYMPSVKVS
Retrocopy PQAILGMDGLCQAKSGMGKTAVFVLATLQQIEPVNGQVTVLVMCHW-ELAFQISKEYEHFSKYMPSVKVS

Parental  VFFGGLSIKKDEEVLKKNCPHVVVGTPGRILALVRNRSLNLKNVKHFVLDECDKMLEQLDMRRDVQEIFR
          VF.GGLSIKKDE.VLKK.CPHVVVGTPGRILALVR.RSLNLKNVKHFVLDECDKMLE.LDMR.DVQEIF.
Retrocopy VFSGGLSIKKDEKVLKKSCPHVVVGTPGRILALVRHRSLNLKNVKHFVLDECDKMLERLDMRQDVQEIFC

Parental  LTPHEKQCMMFSATLSKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDSEKNRKLFDLLDVLE
          LTP.EKQCMMFSATLS.EIRPVCRKFMQDPMEVFVD.E.KLTL.GLQQYYVKL..S.KNR.LFDLLDVLE
Retrocopy LTPREKQCMMFSATLSQEIRPVCRKFMQDPMEVFVDEEPKLTLQGLQQYYVKLQSSKKNRQLFDLLDVLE

Parental  FNQVVIFVKSVQRCMALAQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNLFGRGMDIERV
          F.QVVI.VKS.Q.CMALAQ.L..QNFPA.AIH.G.AQEERLSRYQQFKDFQ..ILVATNLFG.GMD.ERV
Retrocopy FDQVVISVKSMQCCMALAQVLMGQNFPAVAIHWGTAQEERLSRYQQFKDFQLQILVATNLFGQGMDTERV

Parental  NIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNVAELPEEIDISTYIEQ
          .IVFNYDMPEDSDTYLHRVARAG.FGTKGLAITFVSD.NDAK.LNDVQDRFEVNVAELPEEI.ISTY.EQ
Retrocopy DIVFNYDMPEDSDTYLHRVARAGCFGTKGLAITFVSDQNDAKVLNDVQDRFEVNVAELPEEIAISTYMEQ

Parental  S
          S
Retrocopy S

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_147 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Monodelphis domestica	ENSMODG00000002448	1 retrocopy	retro_mdom_357,
Otolemur garnettii	ENSOGAG00000010280	2 retrocopies	retro_ogar_147 , retro_ogar_155,
Otolemur garnettii	ENSOGAG00000010503	1 retrocopy	retro_ogar_3051,