RetrogeneDB ID: retro_ogar_1516

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873550.1:6616445..6617588(+)
• Located in intron of: ENSOGAG00000009745

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ZNF75D
• Ensembl ID: ENSOGAG00000032383
• Aliases: None
• Description: zinc finger protein 75D [Source:HGNC Symbol;Acc:13145]

Sequence

>retro_ogar_1516
AAAGAGCTGAAGGCAGATACATATTTCAACCACTAGATGGGATCTGTATGGAAGACGAAGGGGTCTGTGAAAGAGAGCTC
CAGTCAGAGTAAGAAACACAGGACGAAAAGGAGTCTTGGTCCTGAGAGCGCTTGCAAGCACTTCTGGAGCTTCAATTATC
ATGAAGCACCTGGGCAGCTCGAGGCTGTCAGCCAACTTCAGAAATTATGCCATCAGTGGCTGAGGCCAGAGATCCACTTA
AAAGAGCAGTTCTTGGAACTGCTAGTGGTAGAGCAGTTTCTGACCATTCTGCCCAAGGAGACCCAGTCTGGGTGCAGAAG
CATCATCACCACAACATCAAACAGGCTGTGATCCTGGTAGAATGCTTGCAGAGAAAACCTGGTGGAACAAAGAATGAGGT
TACAGCTTATGATCTGGGAAAGGAGGCAGTGCTCTTGGGAGGAACAGCAGTGGCACCAAGCTTTAAGTGGAATCCAGCAG
ACCCCCAACAAATGGGTATGTTCCAGAAAGAATGTTGGAATACATACCAGGTACTACAAGAACAGCTGGGCTGGAATACT
CACAAAGAAAGCCAGCCTGTATATGAAAGAACTGTGCATGCTCAATAGATTTTAGCCCTTTCTGAGCAGAAAAGCACCAA
AGACCAGAAGATGGCATCTGAGCTCATCTTGCCTGAGTTCTGAGTTGACGTTTGAAGATGTGGCCATGTATTTTTCTGAA
GAAGAATGGCAATTATTGCATACTACTAAAAAGACCTCTACAATGATGTAATGCAGAATAACTATGAAACTGTCATCTCT
CTAGGCTTAATGCTCAGAAATGACACTGGAAATCATCAACTGATATCTGTTTCTGCATCAGAGAAATAAAAATACCAATG
CAAAGTGTCAAAAAATATTAGAATGAAAGTTGTCCAGCAAACAAGGGTATGGAAACAGCATCAACCTTTTCCAAGGAAGA
AAAGAAGGAAAAGTTTCAACTTGTGAAGAAGAGCTTCCAAAACTTACATATCTTCATGGTAAAGACCACAAAGGAGAGAA
ACCTTTTAAATGTCAGGAATGTGGAAAAAGTTTCAGAGTTAGCTCTGATCTCATTAAACATCAGAGAATTCATACTGAAG
AGAAACCCTATAAATGTCAACAG

Alignment

ORF - retro_ogar_1516 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 82.22 %
• Parental protein coverage: 76.8 %
• Number of stop codons detected: 3
• Number of frameshifts detected: 4

Retrocopy - Parental Gene Alignment:

Parental  RELKADKYFNPQMGSMWKTKGSMKESSSQSKKHSTQIESLDPESARRHFRSFNYHEAPGPLEAVSQLQKL
          .ELKAD.YFN..MGS.WKTKGS.KESSSQSKKH.T...SL.PESA..HF.SFNYHEAPG.LEAVSQLQKL
Retrocopy KELKADTYFNH*MGSVWKTKGSVKESSSQSKKHRTK-RSLGPESACKHFWSFNYHEAPGQLEAVSQLQKL

Parental  CHQWLRPEIHSKEQILELLVLEQFLTTLPKETQH-WVQKHHPQDIKQAVILVECLQRKPAGTKNEVTAYD
          CHQWLRPEIH.KEQ.LELLV.EQFLT.LPKETQ..WVQKHH...IKQAVILVECLQRKP.GTKNEVTAYD
Retrocopy CHQWLRPEIHLKEQFLELLVVEQFLTILPKETQS<WVQKHHHHNIKQAVILVECLQRKPGGTKNEVTAYD

Parental  LGKEAVLLGGTAMAPGFKWKPAEPQPMGMFQKECWNTYQVLQEQLGWNTHKESQPVYERAVHAQQILALS
          LGKEAVLLGGTA.AP.FKW.PA.PQ.MGMFQKECWNTYQVLQEQLGWNTHKESQPVYER.VHAQ.ILALS
Retrocopy LGKEAVLLGGTAVAPSFKWNPADPQQMGMFQKECWNTYQVLQEQLGWNTHKESQPVYERTVHAQ*ILALS

Parental  EQ-KITKDRKMASELTLPKSQSLLTFEDVAVYFSEEEWQLLDTSKKT-LYNNVMQDNYETVISVGLMLRN
          EQ.K..K.R.....L......S.LTFEDVA.YFSEEEWQLL.T.KKT.LYN.VMQ.NYETVIS.GLMLRN
Retrocopy EQ>KAPKTRRW--HLSSSCLSSELTFEDVAMYFSEEEWQLLHTTKKT<LYNDVMQNNYETVISLGLMLRN

Parental  DTGNDQPISVSASEIQTPRCKVSKNSRMKVVQQTRVRKQHQPFPRKKRRK-VSTCKEDLPKLTYLHGKGH
          DTGN.Q.ISVSASE.....CKVSKN.RMKVVQQTRV.KQHQPFPRKKRRK.VSTC.E.LPKLTYLHGK.H
Retrocopy DTGNHQLISVSASEK*KYQCKVSKNIRMKVVQQTRVWKQHQPFPRKKRRK>VSTCEEELPKLTYLHGKDH

Parental  TGEKPFKCQECGKSFRVSSDLIKHQRIHTEEKPYKCQQ
          .GEKPFKCQECGKSFRVSSDLIKHQRIHTEEKPYKCQQ
Retrocopy KGEKPFKCQECGKSFRVSSDLIKHQRIHTEEKPYKCQQ

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_1516 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000014531	2 retrocopies	retro_cjac_3200, retro_cjac_917,
Homo sapiens	ENSG00000186376	1 retrocopy	retro_hsap_797,
Otolemur garnettii	ENSOGAG00000032383	1 retrocopy	retro_ogar_1516 ,
Pongo abelii	ENSPPYG00000020747	1 retrocopy	retro_pabe_918,