RetrogeneDB ID: retro_ogar_149

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873542.1:7463647..7464898(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSOGAG00000024067
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSOGAG00000000380
• Aliases: None
• Description: None

Sequence

>retro_ogar_149
ATGCCGCTCTACGAGGGCCTGGGGAGTGGCGGGGAGAAGACTGCGGTTGTGATCAACCTGGGCGAGGCCTTTACCAAGTG
TGGATTTGCTGGAGAAACTGGGCCAAGATGTATAATTCCTAGTGTGATAGAAAGAGCTGGCTTGCCTAAGCCTATCAAAG
TTATTCAGTATAATATCAATACAGAAGAATTATATTCCTACCTAAAAGAATTCATCCATATCCTGTATTTTAGGCATCTG
TTGGTGAATCCCAGAGACCGCTGGGTTGTGGTCATCGAGTCAGTGTTGTGTCCCTCCCACTTCAGAGAGACAGTCACACA
TGTGCTTTTCAAATATTTTGAGGTTCCATTGGTCTTGCTTGCTCCAAGTCATCTAATGGCTCTTCTGACCCTTGGCATGA
ACTCTGCCATGGTCCTGGATTGTGGATATAGGGAAAGCCTCGTGTTACCCGTATATGAGGGAATCCCAGTACTGAATTGT
TGGGGAGCACTCCCCTTGGGAGGAAAAGCTATTCACAAGGAGCTGGAAACTCAGCTGTTGGAACAATGCACTGTGGACAC
CAGTGCTGCTAAAGAGCAGAGCCTTCCCTCAGTGATGGGTTCAGTACCGGAAGGTGTCTTAGAGGACATTAAAGTGCGTA
CTTGCTTTGCTAGTGATCTGAAGTGTGGACTAAAAGTCCAAGCAGCAAAATTTAATAGTGATGGGAATAATAAGCGTCCC
TCGCCACCCCCAAATGTTGATTATCCATTAGATGGAGAGAAGATTTTACATGTTCTTGGATCAATCAGAGATTCGGTGGT
GGAAATTCTTTTTGAAGATAATGAAGAGAAGTCAGTTGCCACTTTAAGACTGGATTCTCTTATGCAGTGCCCAATAGATA
CCAGGAAGCAATTAGCAGAGAATTTGGTAATCATAGGTGGCACATCTATGTTGCCAGGATTTCTCCATAGATTGCTTGCA
GAAATAAGGTATTTGGTAGAAAAAACAAAATATAAAAAACCACTTGGCACCAAGACATTTCGAATTCATACTCCACCTGC
AAAGGCCCATTGTGTGGCCTGGTTGGGAGGAGCTATTTTTGGAGCATTGCAAGATATACTTGGGTGCCGCTCCATTTCAA
AGGAGTATTATAATCAGACAGGCCGTATACCAGATTGGTGTTCTCTCAACAACCCACCCTTGGAAATGATGTTTGATGTC
AGCAAAGCTCAACTGCCTCTCATGAAGAGAGCATTTTCTACTGAGAAATAA

Alignment

ORF - retro_ogar_149 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 94.72 %
• Parental protein coverage: 100.0 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MPLYEGLGSGGEKTAVVIDLGEAFTKCGFAGETGPRCIIPSVIKRAGLPKPIKVVQYNINTEELYSYLKE
          MPLYEGLGSGGEKTAVVI.LGEAFTKCGFAGETGPRCIIPSVI.RAGLPKPIKV.QYNINTEELYSYLKE
Retrocopy MPLYEGLGSGGEKTAVVINLGEAFTKCGFAGETGPRCIIPSVIERAGLPKPIKVIQYNINTEELYSYLKE

Parental  FIHILYFRHLLVNPRDRRVVVIESVLCPSHFRETLTRVLFKYFEVPSVLLAPSHLMALLTLGINSAMVLD
          FIHILYFRHLLVNPRDR.VVVIESVLCPSHFRET.T.VLFKYFEVP.VLLAPSHLMALLTLG.NSAMVLD
Retrocopy FIHILYFRHLLVNPRDRWVVVIESVLCPSHFRETVTHVLFKYFEVPLVLLAPSHLMALLTLGMNSAMVLD

Parental  CGYRESLVLPIYEGIPVLNCWGALPLGGKAIHKELETQLLEQCTVDTSAAKEQSLPSVMGSVPEGVLEDI
          CGYRESLVLP.YEGIPVLNCWGALPLGGKAIHKELETQLLEQCTVDTSAAKEQSLPSVMGSVPEGVLEDI
Retrocopy CGYRESLVLPVYEGIPVLNCWGALPLGGKAIHKELETQLLEQCTVDTSAAKEQSLPSVMGSVPEGVLEDI

Parental  KVRTCFVSDLKRGLKVQAAKFNIDGNNERPSPPPNVDYPLDGEKILHVLGSIRDSVVEILFEQDNEEKSV
          KVRTCF.SDLK.GLKVQAAKFN.DGNN.RPSPPPNVDYPLDGEKILHVLGSIRDSVVEILFE.DNEEKSV
Retrocopy KVRTCFASDLKCGLKVQAAKFNSDGNNKRPSPPPNVDYPLDGEKILHVLGSIRDSVVEILFE-DNEEKSV

Parental  ATLILDSLMQCPIDTRKQLAENLVIIGGTSMLPGFLHRLLAEIRYLVEKPKYKKTLGTKTFRIHTPPAKA
          ATL.LDSLMQCPIDTRKQLAENLVIIGGTSMLPGFLHRLLAEIRYLVEK.KYKK.LGTKTFRIHTPPAKA
Retrocopy ATLRLDSLMQCPIDTRKQLAENLVIIGGTSMLPGFLHRLLAEIRYLVEKTKYKKPLGTKTFRIHTPPAKA

Parental  NCVAWLGGAIFGALQDILGSRSVSKEYYNQTGRIPDWCSLNNPPLEMMFDVGKAQPPLMKRAFSTEK
          .CVAWLGGAIFGALQDILG.RS.SKEYYNQTGRIPDWCSLNNPPLEMMFDV.KAQ.PLMKRAFSTEK
Retrocopy HCVAWLGGAIFGALQDILGCRSISKEYYNQTGRIPDWCSLNNPPLEMMFDVSKAQLPLMKRAFSTEK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_149 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Dasypus novemcinctus	ENSDNOG00000011261	1 retrocopy	retro_dnov_1440,
Myotis lucifugus	ENSMLUG00000007553	1 retrocopy	retro_mluc_683,
Otolemur garnettii	ENSOGAG00000000380	1 retrocopy	retro_ogar_149 ,
Tursiops truncatus	ENSTTRG00000013521	1 retrocopy	retro_ttru_1718,