RetrogeneDB ID: | retro_ocun_359 | ||
Retrocopy location | Organism: | Rabbit (Oryctolagus cuniculus) | |
| Coordinates: | 1:47261248..47261482(-) | ||
| Located in intron of: | ENSOCUG00000006819 | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | TEX12 | ||
| Ensembl ID: | ENSOCUG00000002174 | ||
| Aliases: | None | ||
| Description: | testis expressed 12 [Source:HGNC Symbol;Acc:11734] |
Retrocopy-Parental alignment summary:
>retro_ocun_359
ATGATGGCCAATCACCTTGTAAAACCTGATATTGGAAATTCAATGAGGCCAGGAGAACTGAAGCATCAAATACCAGATGC
TTCAGAGCTGCCCTCTCTTGGAAATTCAGATTCACATTACTCTGAGAACTCTCAGCGATTTTATAAAGATGAGGCCCTGA
AGAAATACTTGAATGATATAAGCAAGGGAATTACTCTAAAGTTATTTAAATATACAGAGAGTGAGAGAAGCAGT
ORF - retro_ocun_359 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 55.0 % |
| Parental protein coverage: | 65.04 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | MMASHLVKPDTRSCKRPRETEPQMPDSPQLSSLGKSDSLCSESSGLFYKDEALEKDLNEMSKEINLMLST |
| MMA.HLVKPD.....RP.E...Q.PD...L.SLG.SDS..SE.S..FYKDEAL.K.LN..SK.I.L.L.. | |
| Retrocopy | MMANHLVKPDIGNSMRPGELKHQIPDASELPSLGNSDSHYSENSQRFYKDEALKKYLNDISKGITLKLFK |
| Parental | YAKILSERAA |
| Y....SER.. | |
| Retrocopy | YTE--SERSS |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
| Library | Retrocopy expression | Parental gene expression |
|---|---|---|
| SRP017611_brain | 0 .00 RPM | 0 .17 RPM |
| SRP017611_kidney | 0 .00 RPM | 0 .10 RPM |
| SRP017611_liver | 0 .00 RPM | 0 .23 RPM |
Oryctolagus cuniculus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ocun_359 retrocopy.
Oryctolagus cuniculus was not studied using FANTOM5 data.
retro_ocun_359 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_ocun_359 has 0 orthologous retrocopies within eutheria group .Parental genes homology:
Parental genes homology involve 3 parental genes, and 3 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Cavia porcellus | ENSCPOG00000009900 | 1 retrocopy | |
| Oryctolagus cuniculus | ENSOCUG00000002174 | 1 retrocopy |
retro_ocun_359 ,
|
| Tarsius syrichta | ENSTSYG00000006348 | 1 retrocopy |