RetrogeneDB ID: retro_nleu_620

Retrocopy location

• Organism: Gibbon (Nomascus leucogenys)
• Coordinates: GL397268.1:24577203..24577786(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: KLF7
• Ensembl ID: ENSNLEG00000007123
• Aliases: None
• Description: Kruppel-like factor 7 (ubiquitous) [Source:HGNC Symbol;Acc:6350]

Sequence

>retro_nleu_620
GTTGCTGAGACCTGCCTCAGCCTCCAGCCGCCAACTCTTCTCTAGACAGCTACACAGCTGTCAACCAGGTCCAGCTCAAC
ACAACGACCTCATTAATGCCCCTATTGTCCCCTGAGCTCAGCCGCCATCTGGTCAAAACCTCACAAACTCTCTCTGCCGT
GGATGGCACGTTGAAACTAGTGGCCAAGAAAGCTGCTCTCATCTCCGTAAAGGTGGGAGGGGTCACAACAGCTTCAGCAG
CCGTGATGGTGCCAGGGCCGTTAAGAGTGGACAGAGCGACAGTGACCAAGGAGGGCTAGGGGCTGAAGCATGTCCTGAAA
ACAAGAGGGTTCACTGCTGTCAGTTTAATAGGTGCCAGGAAGTTTATACAAAAAGCTCCCACTTAAAGGCCCATCCGAGG
ACTCACACAGGTGAGAAGCCTTACAGGTACTCATGGGAGGGATGCTAGTGGCGTTTTGCATGAAGCGATGAGCTCACGAG
GCACTCTGGGAAACACACAGGTGCAAACCTCTTCAAATGCAACCACTGCAACAGGTGTTTTTCCAGGTCTGACCATCTTG
CCCTCCCTATGAAGAGACATATC

Alignment

ORF - retro_nleu_620 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 82.5 %
• Parental protein coverage: 69.23 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  LSETCLSLQP-ASSSLDSYTAVNQAQLNAVTSLTPPSSPELSRHLVKTSQTLSAVDGTVTLKLVAKKAAL
          ..ETCLSLQP.A.SSLDSYTAVNQ.QLN..TSL.P..SPELSRHLVKTSQTLSAVDGT..LKLVAKKAAL
Retrocopy VAETCLSLQP<ANSSLDSYTAVNQVQLNTTTSLMPLLSPELSRHLVKTSQTLSAVDGT--LKLVAKKAAL

Parental  SSVKVGGVATAAAAVTAAG-AVKSGQSDSDQGGLGAEACPENKKRVHRCQFNGCRKVYTKSSHLKAHQRT
          .SVKVGGV.TA.AAV...G.AVKSGQSDSDQGGLGAEACPENK.RVH.CQFN.C..VYTKSSHLKAH.RT
Retrocopy ISVKVGGVTTASAAVMVPG<AVKSGQSDSDQGGLGAEACPENK-RVHCCQFNRCQEVYTKSSHLKAHPRT

Parental  HTGEKPYKCSWEGCEWRFARSDELTRHYRKHTGAKPFKCNHCDRCFSRSDHLALHMKRHI
          HTGEKPY..SWEGC.WRFA.SDELTRH..KHTGA..FKCNHC.RCFSRSDHLAL.MKRHI
Retrocopy HTGEKPYRYSWEGC*WRFA*SDELTRHSGKHTGANLFKCNHCNRCFSRSDHLALPMKRHI

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Nomascus leucogenys was not studied using RNA-Seq expression data.

ChIP-Seq

Nomascus leucogenys was not studied using ChIP-Seq data.

EST

Nomascus leucogenys was not studied using EST data.

TSS

Nomascus leucogenys was not studied using FANTOM5 data.

Lab

retro_nleu_620 was not experimentally validated.

Homology

Retrocopy orthology:

Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 7 parental genes, and 7 retrocopies.

Species	Parental gene accession	Retrocopies number
Homo sapiens	ENSG00000118263	1 retrocopy	retro_hsap_2880,
Gorilla gorilla	ENSGGOG00000009338	1 retrocopy	retro_ggor_1996,
Nomascus leucogenys	ENSNLEG00000007123	1 retrocopy	retro_nleu_620 ,
Nomascus leucogenys	ENSNLEG00000016120	1 retrocopy	retro_nleu_65,
Nomascus leucogenys	ENSNLEG00000017046	1 retrocopy	retro_nleu_2431,
Pongo abelii	ENSPPYG00000013114	1 retrocopy	retro_pabe_2384,
Pan troglodytes	ENSPTRG00000012850	1 retrocopy	retro_ptro_1948,