RetrogeneDB ID: retro_nleu_2987

Retrocopy location

• Organism: Gibbon (Nomascus leucogenys)
• Coordinates: GL397545.1:734616..734939(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: UBE2R2
• Ensembl ID: ENSNLEG00000005052
• Aliases: None
• Description: None

Sequence

>retro_nleu_2987
TTCAAGGCGCGCCTCAAGATCCCCATCGACTACCCATACTCTCCACCGGCCTTTCGGTTCCTGACCAAGATGTGGCACCC
TAACATCTACGAGACGGGGACGTGTGTATCTCCATCCTCCACCCACCGGCGAACGACCCCCAGAGCGGGGAGCTGCCCTG
AGAGAGATGGAACCCCACGCAGAACGTCAGGACCATCCTCCTGAGTGTGATCTCCCTCCTGAACGAGCCCAACACCTTCT
CGCCCGCCAACGTGGACGCCTCCGTGATGTACAGGAAGTGGAAAGAGAGCAAGGGGAAGGATCGGGAGTACACAGACATC
ATC

Alignment

ORF - retro_nleu_2987 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 85.32 %
• Parental protein coverage: 99.08 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  FQAHIKFPIDYPYSPPTFRFLTKMWHPNIYE-NGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLS
          F.A..K.PIDYPYSPP.FRFLTKMWHPNIYE..GDVCISILHPP..DPQSGELP.ERWNPTQNVRTILLS
Retrocopy FKARLKIPIDYPYSPPAFRFLTKMWHPNIYE<DGDVCISILHPPANDPQSGELP*ERWNPTQNVRTILLS

Parental  VISLLNEPNTFSPANVDASVMFRKWRDSKGKDKEYAEII
          VISLLNEPNTFSPANVDASVM.RKW..SKGKD.EY..II
Retrocopy VISLLNEPNTFSPANVDASVMYRKWKESKGKDREYTDII

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Nomascus leucogenys was not studied using RNA-Seq expression data.

ChIP-Seq

Nomascus leucogenys was not studied using ChIP-Seq data.

EST

Nomascus leucogenys was not studied using EST data.

TSS

Nomascus leucogenys was not studied using FANTOM5 data.

Lab

retro_nleu_2987 was not experimentally validated.

Homology

Retrocopy orthology:

Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 6 retrocopies.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000006793	1 retrocopy	retro_mluc_2175,
Monodelphis domestica	ENSMODG00000003686	2 retrocopies	retro_mdom_45, retro_mdom_923,
Nomascus leucogenys	ENSNLEG00000005052	3 retrocopies	retro_nleu_1451, retro_nleu_2245, retro_nleu_2987 ,