RetrogeneDB ID: retro_nleu_2797

Retrocopy location

• Organism: Gibbon (Nomascus leucogenys)
• Coordinates: GL397432.1:296504..296805(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: PGRMC1
• Ensembl ID: ENSNLEG00000014842
• Aliases: None
• Description: None

Sequence

>retro_nleu_2797
GGCAAGGTGTTCAGCATGACAAGAGATTGCAAGTTCCAAGGGCCAAGGGGCCACACAGGATCTTTGCCGAAAGAGATACA
TCCAGGGGCCCTGCCACATTTTGCCTGGATAAGGGAGCACTGCAGGACAAGCATGATGACCTTTCTGACCTCCCTCCTGC
CCAGGAGGAGACCCAGAGTGACTGGGCCTCTCAGTTCACGTTCAAGTATTCTCAGCTGGATAAACTGCTGAAGGAGGGGA
GGTACCCACTGTGGATTCAGATAAGGAAGAACCAAAAGATGAGAATGTACAGAAAAATGAT

Alignment

ORF - retro_nleu_2797 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 66.99 %
• Parental protein coverage: 51.79 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  GKVFDVTKGRKFYGP-EGPYGVFAGRDASRGLATFCLDKEALKDEYDDLSDLTAAQQETLSDWESQFTFK
          GKVF..T...KF.GP..GP...FA.RD.SRG.ATFCLDK.AL.D..DDLSDL..AQ.ET.SDW.SQFTFK
Retrocopy GKVFSMTRDCKFQGP<KGPHRIFAERDTSRGPATFCLDKGALQDKHDDLSDLPPAQEETQSDWASQFTFK

Parental  YHHVGKLLKE-GEEPTVYSDEEEPKDESARKND
          Y....KLLKE.GE.PTV.SD.EEPKDE...KND
Retrocopy YSQLDKLLKE<GEVPTVDSDKEEPKDENVQKND

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Nomascus leucogenys was not studied using RNA-Seq expression data.

ChIP-Seq

Nomascus leucogenys was not studied using ChIP-Seq data.

EST

Nomascus leucogenys was not studied using EST data.

TSS

Nomascus leucogenys was not studied using FANTOM5 data.

Lab

retro_nleu_2797 was not experimentally validated.

Homology

Retrocopy orthology:

Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 7 parental genes, and 7 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000018372	1 retrocopy	retro_cfam_1237,
Homo sapiens	ENSG00000101856	1 retrocopy	retro_hsap_1824,
Macaca mulatta	ENSMMUG00000014466	1 retrocopy	retro_mmul_1252,
Nomascus leucogenys	ENSNLEG00000014842	1 retrocopy	retro_nleu_2797 ,
Pongo abelii	ENSPPYG00000020666	1 retrocopy	retro_pabe_1491,
Rattus norvegicus	ENSRNOG00000012786	1 retrocopy	retro_rnor_1461,
Ictidomys tridecemlineatus	ENSSTOG00000024047	1 retrocopy	retro_itri_1619,