RetrogeneDB ID: retro_nleu_2643

Retrocopy location

• Organism: Gibbon (Nomascus leucogenys)
• Coordinates: GL397386.1:190973..191628(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ENSG00000073578
• Ensembl ID: ENSNLEG00000001292
• Aliases: None
• Description: None

Sequence

>retro_nleu_2643
GGCACACGTGGTGCTGGTTGTCTCATTACGGAAGGATGTCGTGGAGAGGGAGGCATTCTCATTAACAGTCAAGGCGAAAG
GTTTATGGAGCGATACGCCCCTGTCGCGAAGGACCTGGCGTCTAGAGATGTGGTGTCTCAGTCGATGACTCTGGAGATCC
GCAAAGGAAGAGGCTGTGGCCCTGAGGAAGATCACGTCTACCTGCAGCTGCACCATCTACCTCCAGAGCAGCTGGCCACG
CGCCTGCGCGGCATTTCAGAGACAGCCGTGATCTTCACTGGCGTGGACGTCACGAAGGAGCCAATCCCTGTCCTCCCCAC
CGTGCATTACAACATGGATGGCATTCCCACCAGCTACAAGGGGCAGGTCCTGAGGCATGTGAATGGCTAGGATCAGATTG
TGCCCGGCCTGTACACCTGTGGGGAGGCCGCCTGTGCCTCGGTACATGGTGCCAACCGCCTCGGGACAAACTCGCTGTTG
GACCTGGTTGTCTGGTCAGGCATGTGCCCTGAGCATCGAAAAGTCATGCAGGCCTGGAGATAAAGTCCCTCCAATTAAAC
CAAATGCTGGGGAAGAATCTGTCATGAATCTTGACAAATTGAGATTTGCTGATGGAAGCATAAGAACATCGGAACTGCGA
CTCAGCATGCAGAAG

Alignment

ORF - retro_nleu_2643 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 96.8 %
• Parental protein coverage: 63.93 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  GTRGAGCLITEGCRGEGGILINSQGERFMERYAPVAKDLASRDVVSRSMTLEIREGRGCGPEEDHVYLQL
          GTRGAGCLITEGCRGEGGILINSQGERFMERYAPVAKDLASRDVVS.SMTLEIR.GRGCGPEEDHVYLQL
Retrocopy GTRGAGCLITEGCRGEGGILINSQGERFMERYAPVAKDLASRDVVSQSMTLEIRKGRGCGPEEDHVYLQL

Parental  HHLPPEQLATRLRGISETAVIFIGVDVMKEPIPVLPTVHYNMDGIPTSYKGQVLRHVNGQDQIVPGLYTC
          HHLPPEQLATRLRGISETAVIF.GVDV.KEPIPVLPTVHYNMDGIPTSYKGQVLRHVNG.DQIVPGLYTC
Retrocopy HHLPPEQLATRLRGISETAVIFTGVDVTKEPIPVLPTVHYNMDGIPTSYKGQVLRHVNG*DQIVPGLYTC

Parental  GEAACASVHGANRLGANSLLDLVV-GQACALSIEKSCRPGDKVPPIKPNAGEESVMNLDKLRFADGSIRT
          GEAACASVHGANRLG.NSLLDLVV.GQACALSIEKSCRPGDKVPPIKPNAGEESVMNLDKLRFADGSIRT
Retrocopy GEAACASVHGANRLGTNSLLDLVV>GQACALSIEKSCRPGDKVPPIKPNAGEESVMNLDKLRFADGSIRT

Parental  SELRLSMQK
          SELRLSMQK
Retrocopy SELRLSMQK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Nomascus leucogenys was not studied using RNA-Seq expression data.

ChIP-Seq

Nomascus leucogenys was not studied using ChIP-Seq data.

EST

Nomascus leucogenys was not studied using EST data.

TSS

Nomascus leucogenys was not studied using FANTOM5 data.

Lab

retro_nleu_2643 was not experimentally validated.

Homology

Retrocopy orthology:

Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Nomascus leucogenys	ENSNLEG00000001292	1 retrocopy	retro_nleu_2643 ,
Ornithorhynchus anatinus	ENSOANG00000010157	1 retrocopy	retro_oana_90,
Xenopus tropicalis	ENSXETG00000023408	1 retrocopy	retro_xtro_61,
Drosophila melanogaster	FBgn0261439	1 retrocopy	retro_dmel_7,