RetrogeneDB ID: retro_nleu_2584

Retrocopy location

• Organism: Gibbon (Nomascus leucogenys)
• Coordinates: GL397376.1:2054919..2055217(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ENY2
• Ensembl ID: ENSNLEG00000004284
• Aliases: None
• Description: None

Sequence

>retro_nleu_2584
GTGGTTAGCAAGATGAACAAAGATGCGCAGATGAGAGGAGCCATTAACCAAAAGTTGATAGAAACTGGAGAAAGAGAATG
CTTCAAAGAGTTGCTGAGAGCTAAATTAATTGAATGTGGCCGGAAGGATCAGTTGAAGGCACACTGTAAACAGGTAATTA
AAGAAAAAAGACTAGAACACATTACTGTTGATGACTTGGTGGCTGAAATCACTCCAAAAGGCAGAGCCTGGTACTTGACA
GTGTAAAGAAGGAGCTCTACAAAGAATAAGAACATTCCTTGCTCAGCAGGCCAGCCTT

Alignment

ORF - retro_nleu_2584 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 89.22 %
• Parental protein coverage: 99.01 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  VVSKMNKDAQMRAAINQKLIETGERERLKELLRAKLIECGWKDQLKAHCKEVIKEKGLEHVTVDDLVAEI
          VVSKMNKDAQMR.AINQKLIETGERE..KELLRAKLIECG.KDQLKAHCK.VIKEK.LEH.TVDDLVAEI
Retrocopy VVSKMNKDAQMRGAINQKLIETGERECFKELLRAKLIECGRKDQLKAHCKQVIKEKRLEHITVDDLVAEI

Parental  TPKGRA-LVPDSVKKEL-LQRIRTFLAQHASL
          TPKGRA.LV.DSVKKEL.LQRIRTFLAQ.ASL
Retrocopy TPKGRA<LVLDSVKKEL<LQRIRTFLAQQASL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Nomascus leucogenys was not studied using RNA-Seq expression data.

ChIP-Seq

Nomascus leucogenys was not studied using ChIP-Seq data.

EST

Nomascus leucogenys was not studied using EST data.

TSS

Nomascus leucogenys was not studied using FANTOM5 data.

Lab

retro_nleu_2584 was not experimentally validated.

Homology

Retrocopy orthology:

Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 8 parental genes, and 16 retrocopies.

Species	Parental gene accession	Retrocopies number
Anolis carolinensis	ENSACAG00000003039	1 retrocopy	retro_acar_1,
Dasypus novemcinctus	ENSDNOG00000007377	1 retrocopy	retro_dnov_25,
Equus caballus	ENSECAG00000023565	1 retrocopy	retro_ecab_715,
Echinops telfairi	ENSETEG00000010882	2 retrocopies	retro_etel_1826, retro_etel_450,
Myotis lucifugus	ENSMLUG00000027585	1 retrocopy	retro_mluc_357,
Nomascus leucogenys	ENSNLEG00000004284	3 retrocopies	retro_nleu_2535, retro_nleu_2584 , retro_nleu_2585,
Sarcophilus harrisii	ENSSHAG00000001787	4 retrocopies	retro_shar_454, retro_shar_675, retro_shar_815, retro_shar_816,
Tursiops truncatus	ENSTTRG00000001742	3 retrocopies	retro_ttru_46, retro_ttru_845, retro_ttru_997,