RetrogeneDB ID: retro_nleu_2037

Retrocopy location

• Organism: Gibbon (Nomascus leucogenys)
• Coordinates: GL397324.1:9364406..9364765(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: UBE2H
• Ensembl ID: ENSNLEG00000012685
• Aliases: None
• Description: None

Sequence

>retro_nleu_2037
AGGAGCCGGTCAGAGGGATTCATGAATAAAATTTTCCATCCCAACATTGATGACGCATCAGGAACTGTGTGTCTAGATGT
GATTAATCAAACTTGGACAGCTCTCTATGATCTTACCAATATATTTGAGTCCTTCCTGCCCCAGTTGTTGGCCTATCCTA
ACCCCATAGATCCTCCAATGGTGAAGCTGCAGCCATGTATCTCCACCGACCAGAAGAATACAAGCAGAAAATTAAAGAGT
ACATCTAGAAATATGCCACGGAGGAGGCGCTGAAAGAGCAGGAAGAGGGTACCGGGGACAGCTCATCGGAGAGCTCTATA
TCTGACTTTTCCGAAGATGAGGCCCAGGATATGGAGTTG

Alignment

ORF - retro_nleu_2037 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 92.56 %
• Parental protein coverage: 65.57 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  KSPSIGFMNKIFHPNIDEASGTVCLDVINQTWTALYDLTNIFESFLPQLLAYPNPIDP-LNGDAAAMYLH
          .S.S.GFMNKIFHPNID.ASGTVCLDVINQTWTALYDLTNIFESFLPQLLAYPNPIDP..NG.AAAMYLH
Retrocopy RSRSEGFMNKIFHPNIDDASGTVCLDVINQTWTALYDLTNIFESFLPQLLAYPNPIDP<SNGEAAAMYLH

Parental  RPEEYKQKIKEYIQKYATEEALKEQEEGTGDSSSESSMSDFSEDEAQDMEL
          RPEEYKQKIKEYI.KYATEEALKEQEEGTGDSSSESS.SDFSEDEAQDMEL
Retrocopy RPEEYKQKIKEYI*KYATEEALKEQEEGTGDSSSESSISDFSEDEAQDMEL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Nomascus leucogenys was not studied using RNA-Seq expression data.

ChIP-Seq

Nomascus leucogenys was not studied using ChIP-Seq data.

EST

Nomascus leucogenys was not studied using EST data.

TSS

Nomascus leucogenys was not studied using FANTOM5 data.

Lab

retro_nleu_2037 was not experimentally validated.

Homology

Retrocopy orthology:

Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 6 parental genes, and 8 retrocopies.

Species	Parental gene accession	Retrocopies number
Choloepus hoffmanni	ENSCHOG00000003605	2 retrocopies	retro_chof_1862, retro_chof_1932,
Callithrix jacchus	ENSCJAG00000010520	1 retrocopy	retro_cjac_1081,
Homo sapiens	ENSG00000186591	1 retrocopy	retro_hsap_3977,
Nomascus leucogenys	ENSNLEG00000012685	1 retrocopy	retro_nleu_2037 ,
Pongo abelii	ENSPPYG00000017997	1 retrocopy	retro_pabe_3271,
Rattus norvegicus	ENSRNOG00000048205	2 retrocopies	retro_rnor_2188, retro_rnor_2266,