RetrogeneDB ID: retro_mputfur_885

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896965.1:6249625..6249892(+)
• Located in intron of: ENSMPUG00000002753

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: MCFD2
• Ensembl ID: ENSMPUG00000012043
• Aliases: None
• Description: multiple coagulation factor deficiency 2 [Source:HGNC Symbol;Acc:18451]

Sequence

>retro_mputfur_885
GCCAGCTTCTCCCATCCTGGTGGCATGGACCTGGATAAGAATCTAGTGCACGACCAAGAGCATTATCATAAAGCATCTAG
AAGGTGTCATCAACATACCAGAAGCAGAGATGTCCCCACAAGGACTGCAACTCCATTATTTCAAAATGCATGACTATGAT
GGTCATAATTTGTTTGATGGACTAGAACTCTCCACAGCCATCCCTCACGTCCAAAGGACGAAGGGAATGAACAGGTCCCA
CCAATGAGTGAAGCTGAACTGATCAAC

Alignment

ORF - retro_mputfur_885 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 81.32 %
• Parental protein coverage: 60.96 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  ASFSHPGSVGLDKHTVHDQEH-IMEHLEGVINKPEAEMSPQELQLHYFKMHDYDGNNLLDGLELSTAITH
          ASFSHPG...LDK..VHDQEH.I..HLEGVIN.PEAEMSPQ.LQLHYFKMHDYDG.NL.DGLELSTAI.H
Retrocopy ASFSHPGGMDLDKNLVHDQEH>IIKHLEGVINIPEAEMSPQGLQLHYFKMHDYDGHNLFDGLELSTAIPH

Parental  VH-KEEGNEQAPPMSEAELIN
          V..K.EGNEQ.PPMSEAELIN
Retrocopy VQ<KDEGNEQVPPMSEAELIN

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_885 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_885 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 9 parental genes, and 16 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000006097	2 retrocopies	retro_amel_720, retro_amel_906,
Canis familiaris	ENSCAFG00000032480	1 retrocopy	retro_cfam_797,
Choloepus hoffmanni	ENSCHOG00000003286	6 retrocopies	retro_chof_110, retro_chof_1840, retro_chof_2447, retro_chof_3, retro_chof_41, retro_chof_581,
Felis catus	ENSFCAG00000009220	1 retrocopy	retro_fcat_42,
Macropus eugenii	ENSMEUG00000010002	1 retrocopy	retro_meug_2119,
Mustela putorius furo	ENSMPUG00000012043	1 retrocopy	retro_mputfur_885 ,
Sus scrofa	ENSSSCG00000021325	2 retrocopies	retro_sscr_1129, retro_sscr_422,
Ictidomys tridecemlineatus	ENSSTOG00000003692	1 retrocopy	retro_itri_1118,
Vicugna pacos	ENSVPAG00000010692	1 retrocopy	retro_vpac_368,