RetrogeneDB ID: retro_mputfur_863

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896961.1:5878447..5878659(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: SPINK2
• Ensembl ID: ENSMPUG00000004749
• Aliases: None
• Description: serine peptidase inhibitor, Kazal type 2 (acrosin-trypsin inhibitor) [Source:HGNC Symbol;Acc:11245]

Sequence

>retro_mputfur_863
GGAGGGAGCATGGCAGTCTTGGTGCTGCATGTGGCACTGTTGTTCCCAGACAGGGACTTGGCAGTCTCTTTGGACTCTGA
ACTCTTGAGTGTGGACAGCCTTCAGAATGCAGAACATCAAACTGTGATCAGTATAAATAACCAGGATGCCCTAGAGACTT
GAGCGCTGGGTGTGGAAAGGACATGTCTGCTTATCCCAACCAGTGTACTCTG

Alignment

ORF - retro_mputfur_863 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 61.11 %
• Parental protein coverage: 78.89 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  GGSMALSAVRLVLLLLAADLAASLDSLSSEFD-QPSEYRTPNCNQYKLPGCPRDFSPVCGSDMSTYPNEC
          GGSMA.......LL....DLA.SLDS.....D.QPSE.RT.NC.QYK.PGCPRD.S..CG.DMS.YPN.C
Retrocopy GGSMAVLVLHVALLFPDRDLAVSLDSELLSVD<QPSECRTSNCDQYK*PGCPRDLSAGCGKDMSAYPNQC

Parental  TL
          TL
Retrocopy TL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_863 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_863 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Echinops telfairi	ENSETEG00000014129	1 retrocopy	retro_etel_436,
Mustela putorius furo	ENSMPUG00000004749	1 retrocopy	retro_mputfur_863 ,