RetrogeneDB ID: retro_etel_436

Retrocopy location

• Organism: Lesser hedgehog tenrec (Echinops telfairi)
• Coordinates: GeneScaffold_7146:69012..69194(-)
• Located in intron of: ENSETEG00000012929

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSETEG00000014129
• Aliases: None
• Description: None

Sequence

>retro_etel_436
TTGGTGCTGTTGCTCCTGGCCGAGAACATAGCAGCAGCCTCTGCTGGCGGACACTTTGACAGACCTGAAGAATATAGAGT
ACCAGACTGTAGCCAGTATCATTACCAGGATGTATGAGAGACTTCAGCCCTGTGTGTGGGAGAGACATAACCACATATGC
CAACGAATGCTCCTTGTGTATG

Alignment

ORF - retro_etel_436 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 70.97 %
• Parental protein coverage: 72.29 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  LVLLLLAQNVAV-SEDRHFGTPEEYRTPDCSQYQ-LPGCPRDLSPVCGSDMATYANECTLCM
          LVLLLLA.N.A..S...HF..PEEYR.PDCSQY..LPGC.RD.SPVCG.D..TYANEC.LCM
Retrocopy LVLLLLAENIAAASAGGHFDRPEEYRVPDCSQYH<LPGCMRDFSPVCGRDITTYANECSLCM

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Echinops telfairi was not studied using RNA-Seq expression data.

ChIP-Seq

Echinops telfairi was not studied using ChIP-Seq data.

EST

Echinops telfairi was not studied using EST data.

TSS

Echinops telfairi was not studied using FANTOM5 data.

Lab

retro_etel_436 was not experimentally validated.

Homology

Retrocopy orthology:

Echinops telfairi does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Echinops telfairi	ENSETEG00000014129	1 retrocopy	retro_etel_436 ,
Mustela putorius furo	ENSMPUG00000004749	1 retrocopy	retro_mputfur_863,