RetrogeneDB ID: retro_mputfur_821

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896952.1:4103712..4104188(+)
• Located in intron of: ENSMPUG00000017145

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: TOMM34
• Ensembl ID: ENSMPUG00000017645
• Aliases: None
• Description: translocase of outer mitochondrial membrane 34 [Source:HGNC Symbol;Acc:15746]

Sequence

>retro_mputfur_821
CCTGTCACAGCTCAGAAGAGGTGGGATTCCTCACCTTTGGAGTACCACAAAGAGAACACTAAGGGCAAATTCAGAGAAGC
CACAACCACCAAGGGCAGAGTGTCTTCTGCTGGGGATGTGGAGAGAGCCAGAATTCTGAAGGAAGAAGGCAATGAGCTTG
TAAAGAAGGGAAACCATAAGAAAGCTATTGAGAAGTACAGTGAAAGCCTGTCCTTTAGTGACATAGAGTCCGCCACATAC
AGCAACAGAGCGCTCTGCCATTTGGCCCTGAAGCAGTACAAGGAAGCAGTGAGGGACTGCACAGAAGCCCTCAGGCTGGA
TGGAAAGAACGTGAAGGCGTTCTACAGACGAGCGCAAGCCTACAAGGCACTCAAGACTACAAATCCAGCTTTGAAGACAT
CAACAGTCTTCTGCAGCTTGAACCGAGAAACGGCCCTGCCCAGAAGTTGCAGCAGGAAGTTAACCAGAGCTTAAAC

Alignment

ORF - retro_mputfur_821 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 99.38 %
• Parental protein coverage: 51.46 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  PVTAQKRWDSSPLEYHKENTKGKFREATTTKGRVSSAGDVERARILKEEGNELVKKGNHKKAIEKYSESL
          PVTAQKRWDSSPLEYHKENTKGKFREATTTKGRVSSAGDVERARILKEEGNELVKKGNHKKAIEKYSESL
Retrocopy PVTAQKRWDSSPLEYHKENTKGKFREATTTKGRVSSAGDVERARILKEEGNELVKKGNHKKAIEKYSESL

Parental  SFSDIESATYSNRALCHLALKQYKEAVRDCTEALRLDGKNVKAFYRRAQAYKALK-DYKSSFEDINSLLQ
          SFSDIESATYSNRALCHLALKQYKEAVRDCTEALRLDGKNVKAFYRRAQAYKALK.DYKSSFEDINSLLQ
Retrocopy SFSDIESATYSNRALCHLALKQYKEAVRDCTEALRLDGKNVKAFYRRAQAYKALK<DYKSSFEDINSLLQ

Parental  LEPRNGPAQKLQQEVNQSLN
          LEPRNGPAQKLQQEVNQSLN
Retrocopy LEPRNGPAQKLQQEVNQSLN

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_821 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_821 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000006338	1 retrocopy	retro_mluc_2395,
Mustela putorius furo	ENSMPUG00000017645	1 retrocopy	retro_mputfur_821 ,
Ochotona princeps	ENSOPRG00000011862	1 retrocopy	retro_opri_494,