RetrogeneDB ID: | retro_mputfur_509 | ||
Retrocopy location | Organism: | Ferret (Mustela putorius furo) | |
| Coordinates: | GL896917.1:7462938..7463276(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | None | ||
| Ensembl ID: | ENSMPUG00000017487 | ||
| Aliases: | None | ||
| Description: | THAP domain containing, apoptosis associated protein 2 [Source:UniProtKB/TrEMBL;Acc:G9KT67] |
Retrocopy-Parental alignment summary:
>retro_mputfur_509
ACCCACAACACACACGTGACCATCAGCCTCCACAGGCTCCCTCTGGATTCTAGAAGAAGAAAAGAATGGGCTCGCCCACT
TAGGTACAACAATTTTGTGCCAGGAAAACACTTTTCTTTGTTCAAAGCACTTTGAAGTCTCTTGTTCTGACTCAAAGGAC
AAGCTAGACGACTTACAATGGATGCAATTCCAACCAGTTTAGGTTTCTGTACCTATTGAAAGTCCATGAAACTCAAGTCA
AGGAATCTTTTGAAGGAAAACAACAGTTGTACTCCAACAGGACCATCTAGTTTAAGATCAAACGTTAGTAGTCAGCCAGA
ACTACATAACACAGTTAT
ORF - retro_mputfur_509 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 64.35 % |
| Parental protein coverage: | 52.29 % |
| Number of stop codons detected: | 3 |
| Number of frameshifts detected: | 1 |
Retrocopy - Parental Gene Alignment:
| Parental | TYNKHINISFHRFPLDPKRRKEWIRLLRRKNFVPGKHTFLCSKHFEASCFDLTGQTRRLKMDAVPTIFDF |
| T.N.H..IS.HR.PLD..RRKEW.R.LR..NFVPGKH.F...K......F.L.GQ.RRL.MDA.PT...F | |
| Retrocopy | THNTHVTISLHRLPLDSRRRKEWARPLRYNNFVPGKH-FSLFKAL*SLLF*LKGQARRLTMDAIPTSLGF |
| Parental | CTHLKSMKLKSRNLLKKNNSCTPTGPSNLKSNISSQQVLLE-HSY |
| CT..KSMKLKSRNLLK.NNSCTPTGPS.L.SN.SSQ..L...HSY | |
| Retrocopy | CTY*KSMKLKSRNLLKENNSCTPTGPSSLRSNVSSQPELHN<HSY |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Mustela putorius furo was not studied using RNA-Seq expression data.
Mustela putorius furo was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mputfur_509 retrocopy.
Mustela putorius furo was not studied using FANTOM5 data.
retro_mputfur_509 was not experimentally validated.
Retrocopy orthology:
Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 2 parental genes, and 3 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Canis familiaris | ENSCAFG00000000456 | 1 retrocopy | |
| Mustela putorius furo | ENSMPUG00000017487 | 2 retrocopies |
retro_mputfur_167, retro_mputfur_509 ,
|