RetrogeneDB ID: retro_mputfur_197

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: AEYP01117409.1:177..1005(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: DCTN2
• Ensembl ID: ENSMPUG00000001840
• Aliases: None
• Description: dynactin 2 (p50) [Source:HGNC Symbol;Acc:2712]

Sequence

>retro_mputfur_197
GCAAAACTGCTGGCCACCCTGAAGCAGCAGCTGTTGCTTCCCACCTGGAGAAGCTGCTGGGACCAGATGCAGCCATCGAC
CTTACTGACCCTGATGGAGCTCTGGCTAAGTGCTTGTGCTGCAGCTGGAAACCATCAAAAATAGCAAAGGAACCAGTTCA
AGGGGAAAGACCACAGCGGGACTCCTGTAGATAGTAGCCTCGTCACTTACGGACTACATTCTCAACCTGAATAGGACAAG
TTGTCTCAAGCTGCTGAAGTTACAGAACTTGAGAAGTGCCTGACAGAGCTGGAAGCAACTGTACACTGTGATCAGGATGC
TCAGAATCCCCTTTAAGCAGGTGTTCAGGGATCCTGTCTCATGGAGACTGTAGAACTATTGCAAGTAAAGGTGAACGCCC
TGGACCTCGCAGTTTTGGACCAAGTGGAGGCTCGGCTGCAGAGTGTCCTGGGAAAGAAGAATGAAATTGCCAAGCATAAA
GCTTCTGTATAAGATGCAGATGCACAAAGCAAGGTGCACCAGCTATTTGGCACTGTACAGGGATGGAGCCCCATTTCCTA
CCCCCTTCCTGGGCTGGTGCAGAGACTTTTCACCACCAAGCAGCTGCATGAGCAAGCCATGCAGTTTGGTCACCTCCTGA
CTCACTTGGATACTACAAACCAGATGATTGCTAGCTCTCTCAAGGACAACACCACCCTCCTGACCCAGATGCAGACAACT
GTGCATGAGAACCTGTCCACGGTTGAGGGGAATTTTGCCAACATTGACAAACAGATGAAGAAACTGGGAAAGTGAGCACC
TTTAGGAGACGGAGAACGAGGGCAATCC

Alignment

ORF - retro_mputfur_197 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 81.43 %
• Parental protein coverage: 65.64 %
• Number of stop codons detected: 4
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  AKQLAALKQQL-VASHLEKLLGPDAAINLTDPDGALAKRL-LLQLEATKNSKGTGSGGKTT-SGTLVDSS
          AK.LA.LKQQL.VASHLEKLLGPDAAI.LTDPDGALAK.L..LQLE..KNSKGT.S.GKTT.SGT.VDSS
Retrocopy AKLLATLKQQL<VASHLEKLLGPDAAIDLTDPDGALAKCL<VLQLETIKNSKGTSSRGKTT<SGTPVDSS

Parental  LVTYELHSRPEQDKFSQAAKVAELEKRLTELEATVRCDQDAQNPLSAGVQGACLMETVELLQAKVNALDL
          LVTY.LHS.PE.DK.SQAA.V.ELEK.LTELEATV.CDQDAQNPL.AGVQG.CLMETVELLQ.KVNALDL
Retrocopy LVTYGLHSQPE*DKLSQAAEVTELEKCLTELEATVHCDQDAQNPL*AGVQGSCLMETVELLQVKVNALDL

Parental  AVLDQVEARLQSVLGKVNEIAKHKASVEDADTQSKVHQLYDTVQRWSPIASTLPELVQRLVTIKQLHEQA
          AVLDQVEARLQSVLGK.NEIAKHKASV.DAD.QSKVHQL..TVQ.WSPI...LP.LVQRL.T.KQLHEQA
Retrocopy AVLDQVEARLQSVLGKKNEIAKHKASV*DADAQSKVHQLFGTVQGWSPISYPLPGLVQRLFTTKQLHEQA

Parental  MQFGQLLTHLDTTQQMIASSLKDNTTLLTQVQKTMRENLSTVEGNFANIDERMKKLGKTARAGPGRQRDS
          MQFG.LLTHLDTT.QMIASSLKDNTTLLTQ.Q.T..ENLSTVEGNFANID..MKKLGK.A..G.G....S
Retrocopy MQFGHLLTHLDTTNQMIASSLKDNTTLLTQMQTTVHENLSTVEGNFANIDKQMKKLGK*APLGDGERGQS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_197 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_197 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 7 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000000233	3 retrocopies	retro_cfam_1095, retro_cfam_385, retro_cfam_579,
Dipodomys ordii	ENSDORG00000007137	1 retrocopy	retro_dord_441,
Loxodonta africana	ENSLAFG00000013538	1 retrocopy	retro_lafr_312,
Mustela putorius furo	ENSMPUG00000001840	1 retrocopy	retro_mputfur_197 ,
Procavia capensis	ENSPCAG00000016236	1 retrocopy	retro_pcap_430,