RetrogeneDB ID: retro_mputfur_1624

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL897409.1:114257..114596(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: RPL26L1
• Ensembl ID: ENSMPUG00000012729
• Aliases: None
• Description: ribosomal protein L26-like 1 [Source:HGNC Symbol;Acc:17050]

Sequence

>retro_mputfur_1624
ATGAAGTTCAAATCCTCTGTGACTTCTGACTAGTGTAAGAACCATAAAGGGCATTTTATTAAAGCCCCTTCCCACATTTG
CAGCAAGATTATGTCCCTCCTCTGCCCAAACATCTGAAACAGAAGTGCAGTGTTCAATCCATGCCCATCTGAAAGGATGA
CGTCATTCTAGTTCTTGCAGGACAACACAAAAGTCAGCAAATTGGTAACATAGTCCAGGCTTGAAAGAGCTCCAGCGTCT
ACACGGAGCAGGTGCAACAGGAGAAGGCTAATGGCACATTGTCTGTGCAGCGTGCCCCCTCACAAGGGTGTTAACACTAG
ACTAATACCAGACAGAGAT

Alignment

ORF - retro_mputfur_1624 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 52.14 %
• Parental protein coverage: 79.43 %
• Number of stop codons detected: 3
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  MKFNPFVTLDRSKNRKRHF-NAPS-VRRKIMS-SPL-KELRQKYNIRSMPIRKDDDVQMVRGHYKGQQIG
          MKF...VT.D..KN.K.HF..APS....KIMS..PL.K.L.QK....SMPI.KDD......G..K.QQIG
Retrocopy MKFKSSVTSD*CKNHKGHFIKAPSHICSKIMS<PPLPKHLKQKCSVQSMPI*KDDVILVLAGQHKSQQIG

Parental  KVVQVHRKKYVIYIEQVQHEKANGTTVHVGIHPS-KVVITRLKLDKD
          ..VQ......V.Y.EQVQ.EKANGT...V...PS.K.V.TRL..D.D
Retrocopy NIVQA*KSSSV-YTEQVQQEKANGT-LSVQRAPS>KGVNTRLIPDRD

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_1624 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_1624 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 6 parental genes, and 53 retrocopies.

Species	Parental gene accession	Retrocopies number
Dasypus novemcinctus	ENSDNOG00000002289	35 retrocopies	retro_dnov_1106, retro_dnov_1147, retro_dnov_1171, retro_dnov_1258, retro_dnov_1304, retro_dnov_1319, retro_dnov_1344, retro_dnov_1381, retro_dnov_1501, retro_dnov_1676, retro_dnov_1819, retro_dnov_1959, retro_dnov_2039, retro_dnov_2041, retro_dnov_2061, retro_dnov_2078, retro_dnov_2103, retro_dnov_2116, retro_dnov_2121, retro_dnov_2287, retro_dnov_2297, retro_dnov_2438, retro_dnov_2545, retro_dnov_2580, retro_dnov_2632, retro_dnov_300, retro_dnov_306, retro_dnov_467, retro_dnov_646, retro_dnov_666, retro_dnov_681, retro_dnov_760, retro_dnov_850, retro_dnov_970, retro_dnov_985,
Felis catus	ENSFCAG00000026949	1 retrocopy	retro_fcat_524,
Latimeria chalumnae	ENSLACG00000007599	2 retrocopies	retro_lcha_5, retro_lcha_8,
Myotis lucifugus	ENSMLUG00000009799	1 retrocopy	retro_mluc_1556,
Mustela putorius furo	ENSMPUG00000007988	12 retrocopies	retro_mputfur_1003, retro_mputfur_1146, retro_mputfur_1385, retro_mputfur_1428, retro_mputfur_1595, retro_mputfur_251, retro_mputfur_365, retro_mputfur_395, retro_mputfur_488, retro_mputfur_522, retro_mputfur_643, retro_mputfur_685,
Mustela putorius furo	ENSMPUG00000012729	2 retrocopies	retro_mputfur_1624 , retro_mputfur_190,