RetrogeneDB ID: retro_mputfur_1560

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL897253.1:58435..58721(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: SFT2D2
• Ensembl ID: ENSMPUG00000000531
• Aliases: None
• Description: SFT2 domain containing 2 [Source:HGNC Symbol;Acc:25140]

Sequence

>retro_mputfur_1560
ACTGGATTGCTGTGGCTTCCTGGTGTTATAAAGCTCTTTGTAGCATTTTATACCCTTGGAAATACTGCTGCATTAGCCAG
GATGTGCTTTTCAGTGGTATCCATGAAGCAACTGAAGAAAACGTCTGAAACAAGACTGCTTGCAACAATTATTATGCTCC
TGTGTTTCATATTTACGCTGTGTGCTGCTCTTTGGTGGCACAAGAGGGGACAGGCCTTATTATTCTGTATACTGCAGTTT
CTTGTCAATGACCTGGTGTAGTCTGTCATATAACCCACATGCAAGG

Alignment

ORF - retro_mputfur_1560 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 56.12 %
• Parental protein coverage: 62.18 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  TFLLWVPRKGLYLFAVFYTFGNIASIGSTVFLMGPMKQLKRMFEPTRLIATIMVLLCFALTLCSAFWWHN
          T.LLW.P.....LF..FYT.GN.A......F....MKQLK...E.TRL.ATI..LLCF..TLC.A.WWH.
Retrocopy TGLLWLPGV-IKLFVAFYTLGNTAALARMCFSVVSMKQLKKTSE-TRLLATIIMLLCFIFTLCAALWWHK

Parental  KGLALIFCILQ-SLALTWYSLSYIPYAR
          .G.AL.FCILQ..L..TW.SLSY.P.AR
Retrocopy RGQALLFCILQ>FLSMTWCSLSYNPHAR

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_1560 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_1560 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 8 parental genes, and 8 retrocopies.

Species	Parental gene accession	Retrocopies number
Anolis carolinensis	ENSACAG00000010720	1 retrocopy	retro_acar_131,
Callithrix jacchus	ENSCJAG00000016838	1 retrocopy	retro_cjac_2771,
Monodelphis domestica	ENSMODG00000002896	1 retrocopy	retro_mdom_607,
Mustela putorius furo	ENSMPUG00000000531	1 retrocopy	retro_mputfur_1560 ,
Nomascus leucogenys	ENSNLEG00000014912	1 retrocopy	retro_nleu_2370,
Rattus norvegicus	ENSRNOG00000003038	1 retrocopy	retro_rnor_1135,
Sarcophilus harrisii	ENSSHAG00000018938	1 retrocopy	retro_shar_212,
Ictidomys tridecemlineatus	ENSSTOG00000022560	1 retrocopy	retro_itri_133,