RetrogeneDB ID: retro_mputfur_1052

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL897002.1:5268347..5268850(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: DTD2
• Ensembl ID: ENSMPUG00000001065
• Aliases: None
• Description: D-tyrosyl-tRNA deacylase 2 (putative) [Source:HGNC Symbol;Acc:20277]

Sequence

>retro_mputfur_1052
CTGGATGAGAATGGGGGGATACCTCAAGCCCCTGGTGGTTCTGCAGCACTACCTGCACACCTAGTTGCAAGTAAACCCAG
CTGAGGGGTCACCAAGACCCAGTGGGTGGGAGTTCAGAGAGGTTTAATGATGTGTGTGTGTGTGTTTTCCAAGGGAACTA
ATAAAGAACTTCTTCCCCAAATTGTTGATACACTGCTAAATATGAAATTAAGGGAAACAGAAAAAGGCAAGCCTATATCA
GGTCTACCTGGCAATGTTCTTATCATCCTTTAAGCCACCCTCAGGAGGGGAGAGTAAAAGAAGAAACATGCAGTATCACT
CTAACTCTGGAAAAGAGAGAAGGGTTAGAACTTTATTTTCGATTTGTGATTCTAAGTGAGAAGAAATTTGCTGCTAACAG
CAAGAGCCCCAAACCTGGAGTTGTGGTAGAACACGGTACGTACAGAAATAGACAGGTGTCAAAGCTGTATACCAGTGGAC
CATACACACACCTAACTGAGTTT

Alignment

ORF - retro_mputfur_1052 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 63.58 %
• Parental protein coverage: 100.0 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 4

Retrocopy - Parental Gene Alignment:

Parental  MTESGRIPQARA-LLQQCLHARLQVRPAEED-AESQWVEVQRGLVIYVCFF-KGANKELLPKMVNTLLNV
          ..E.G.IPQA....LQ..LH..LQV.PAE......QWV.VQRGL........KG.NKELLP..V.TLLN.
Retrocopy LDENGGIPQAPG>VLQHYLHT*LQVNPAEGS<TKTQWVGVQRGLMXXXXXXSKGTNKELLPQIVDTLLNM

Parental  KLSETENGKHVSILDLPGNVLIIPQATL-GGRVKGRNMQYHSNSGKE-EGLELYSQFVTLCEKELAANSK
          KL.ETE.GK..S...LPGNVLII..ATL.GG..K.RNMQYHSNSGKE.EGLELY..FV.L.EK..AANSK
Retrocopy KLRETEKGKPIS--GLPGNVLIIL*ATL>GGESKRRNMQYHSNSGKE>EGLELYFRFVILSEKKFAANSK

Parental  CAEAGVVVEHGTYGNRQVLQLDTNGPYTHLIEF
          ....GVVVEHGTY.NRQV..L.T.GPYTHL.EF
Retrocopy SPKPGVVVEHGTYRNRQVSKLYTSGPYTHLTEF

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_1052 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_1052 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 7 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000015731	1 retrocopy	retro_amel_696,
Bos taurus	ENSBTAG00000038020	1 retrocopy	retro_btau_23,
Mustela putorius furo	ENSMPUG00000001065	1 retrocopy	retro_mputfur_1052 ,
Ictidomys tridecemlineatus	ENSSTOG00000025562	1 retrocopy	retro_itri_504,
Tursiops truncatus	ENSTTRG00000003788	3 retrocopies	retro_ttru_1617, retro_ttru_1832, retro_ttru_718,