RetrogeneDB ID: | retro_mmus_371 | ||
Retrocopy location | Organism: | Mouse (Mus musculus) | |
| Coordinates: | 1:151182627..151183431(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | Gm11232 | ||
| Ensembl ID: | ENSMUSG00000066141 | ||
| Aliases: | None | ||
| Description: | predicted gene 11232 [Source:MGI Symbol;Acc:MGI:3651439] |
Retrocopy-Parental alignment summary:
>retro_mmus_371
TTGAGTGAAACGCTAGTCGAGAAGCCTGAACATATGAATTTAGAGATGTCCATCCTGGCTCCTTCCAAGAGAAAGCAGCT
CCTAGACAAGAAGGCAGAAGACAAACAGCCCCCTGAGAGTCGGGGTAACAATGGCAGGAGTTCCAAGTCCTCTCCCATGG
GCAAAGACAACACCTGGCCAAGTCCGGAGGCTAAGGTCCCCAGTCAGAAGCGATCTGGGCAAAGCTGGGCTGTCTCCTCC
TGCGGACCCCACAAGAGAAGCAGCAAGCTGGAGGACAAGAGGAGGAACAGACCATCTCGCTTCAGAGAGAGAGGAAGGGA
CAAGCCGGGGTCCACCCACAAAAGAGATTCCTCGCACACAAAACTGCATGTAAAGGACCGAAGGTCCCAGCCAAGATCTC
CTGTGAGGACTCTGAAGCGCAGTCGCTCTGGAGACAGGCAAGGTGCCCCGCACAACTCTGCCAAGAGGCACAGACAGACT
TCTCCTCCAGAAGCCAGCTCATTACCAACATTCTCGCTGCTCATGTCCAGAGTCTTCACCAACGTGGATGCCTTGCAGGT
GAGCCTGGACGACCTGCAAGCCCCCGGAGGTGCCTTCCTGCGTGTGCCCTCAAGCAGCACGGAGCCCATTGTCTTGCAGC
GGGCCTGGCTCACTTGGCAACTGTCCCATGCAGGAGCCGCACTGCACTGGGCGCTTCACACAGTCAAGTCCATCTTGACT
TCGCAAGCCAGCCTGCCCAGATACACCTGGCCCCAAGGCTATTCCTTCACTGCTGACCCTAGACCCGTGCCCACCTCCAA
GATC
ORF - retro_mmus_371 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 71.27 % |
| Parental protein coverage: | 90.85 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | MNETPDEKPGHVKLEMSTQSSSKRMQPLDQKDKENQSSESWGNTGRSSKSSPKGKENTWPKSEVKVPSQK |
| ..ET..EKP.H..LEMS....SKR.Q.LD.K....Q..ES.GN.GRSSKSSP.GK.NTWP..E.KVPSQK | |
| Retrocopy | LSETLVEKPEHMNLEMSILAPSKRKQLLDKKAEDKQPPESRGNNGRSSKSSPMGKDNTWPSPEAKVPSQK |
| Parental | KFQQSWAVSSCGPNKRSSKLKEKKRDKPSPSRERGRDKLVSTHRRDISHTKLHVRDQRPQPRSPVRTLKR |
| ...QSWAVSSCGP.KRSSKL..K.R..PS..RERGRDK..STH.RD.SHTKLHV.D.R.QPRSPVRTLKR | |
| Retrocopy | RSGQSWAVSSCGPHKRSSKLEDKRRNRPSRFRERGRDKPGSTHKRDSSHTKLHVKDRRSQPRSPVRTLKR |
| Parental | SRGGDSPDAPYHSAKRCRKPSLPEASLDLTFSQLMSRVFTNLSALQVTLDDLQAPGGAFLHVPSSSLEPT |
| SR.GD...AP..SAKR.R..S.PEAS...TFS.LMSRVFTN..ALQV.LDDLQAPGGAFL.VPSSS.EP. | |
| Retrocopy | SRSGDRQGAPHNSAKRHRQTSPPEASSLPTFSLLMSRVFTNVDALQVSLDDLQAPGGAFLRVPSSSTEPI |
| Parental | VSQRAWLTWQLYHAGATVHWALQTVNSILNSQASLPRHTCPQGYSFTADPRTVPTSSL |
| V.QRAWLTWQL.HAGA..HWAL.TV.SIL.SQASLPR.T.PQGYSFTADPR.VPTS.. | |
| Retrocopy | VLQRAWLTWQLSHAGAALHWALHTVKSILTSQASLPRYTWPQGYSFTADPRPVPTSKI |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
| Library | Retrocopy expression | Parental gene expression |
|---|---|---|
| SRP007412_brain | 0 .00 RPM | 0 .00 RPM |
| SRP007412_cerebellum | 0 .04 RPM | 0 .00 RPM |
| SRP007412_heart | 0 .06 RPM | 0 .00 RPM |
| SRP007412_kidney | 0 .10 RPM | 0 .04 RPM |
| SRP007412_liver | 0 .00 RPM | 0 .00 RPM |
| SRP007412_testis | 0 .00 RPM | 0 .09 RPM |
RNA Polymerase II activity near the 5' end of retro_mmus_371 was not detected
No EST(s) were mapped for retro_mmus_371 retrocopy.
No TSS is located nearby retro_mmus_371 retrocopy 5' end.
retro_mmus_371 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_mmus_371 has 0 orthologous retrocopies within eutheria group .Parental genes homology:
Parental genes homology involve 1 parental gene, and 6 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Mus musculus | ENSMUSG00000066141 | 6 retrocopies |