RetrogeneDB ID: retro_mmur_741

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: GeneScaffold_550:43791..44338(+)
• Located in intron of: ENSMICG00000014203

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: MRPL46
• Ensembl ID: ENSMICG00000015826
• Aliases: None
• Description: mitochondrial ribosomal protein L46 [Source:HGNC Symbol;Acc:1192]

Sequence

>retro_mmur_741
AAGCGACTTGCAAGAAAGAAGGCCGACTTGTGTGATGAAGAAGATGAACAGGATATATTGCTGGTGCAAGATTTGGAAGA
TATGTGGGAGCAGACATTCCTATAGCTCAAACCTGGAGCTCACATAACAGAAGCCGATAAAAAGAATGACTGAACTTCAC
TGCACGGAAAGCTGGACAGGAAACTTACCCCACTGGTCAGAGAGAAGCCTGGAGACCAGGATGTTCGCATGTTGCCCCAG
GCAGAGTGGCAGCCTGGGGAGATCCTTCAAGGAACAGCTGAGCAAACCCTGGCCACGCTCTCAGAAAACACCATGGAAGC
CATGTTCCTAGGAAATGCACTCTGTTGCCACTACAAGTTCAAGTTCCCCCAAGCAATGCAGACAGAGAGTAACCTTAGGG
CCAAAGTATTCTTCAAAGTACTACTACTAACTGGTGACTTTTCCCAGGCTGGGAAGAAGGGCAATCACGTGTGGGTCAGT
AAGGAGGAGCTGGGTGACTATTTGAAACCAAAAATATCTTGCTCAGGTTAGGAGATTTCTCTGGGAC

Alignment

ORF - retro_mmur_741 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 81.62 %
• Parental protein coverage: 65.71 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  ERLERKKADSYDEDDDRDDILLVQDLEDMWEQTFLQFKPGARITEADEKNDRTSLHRKLDRNLILLVREK
          .RL.RKKAD..DE.D...DILLVQDLEDMWEQTFL..KPGA.ITEAD.KND.TSLH.KLDR.L..LVREK
Retrocopy KRLARKKADLCDEEDEQ-DILLVQDLEDMWEQTFL*LKPGAHITEADKKND*TSLHGKLDRKLTPLVREK

Parental  LGDQDVWMLPQAEWQPGETLRGTAERTLATLSENNMEAKFLGNAPCGHYKFKFPQAMRTESNLGAKVFFF
          .GDQDV.MLPQAEWQPGE.L.GTAE.TLATLSEN.MEA.FLGNA.C.HYKFKFPQAM.TESNL.AKV.FF
Retrocopy PGDQDVRMLPQAEWQPGEILQGTAEQTLATLSENTMEAMFLGNALCCHYKFKFPQAMQTESNLRAKV-FF

Parental  KALLLTGDFSQAGKKGHHVWVSKEELGDYLKP-KYLAQVRKFLLD
          K.LLLTGDFSQAGKKG.HVWVSKEELGDYLKP.KYLAQVR.FL.D
Retrocopy KVLLLTGDFSQAGKKGNHVWVSKEELGDYLKP>KYLAQVRRFLWD

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_741 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_741 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000013019	1 retrocopy	retro_cjac_3018,
Felis catus	ENSFCAG00000014966	1 retrocopy	retro_fcat_480,
Microcebus murinus	ENSMICG00000015826	1 retrocopy	retro_mmur_741 ,
Otolemur garnettii	ENSOGAG00000004736	1 retrocopy	retro_ogar_1280,
Rattus norvegicus	ENSRNOG00000018547	1 retrocopy	retro_rnor_433,