RetrogeneDB ID: retro_mmur_441

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: GeneScaffold_3148:511741..512022(-)
• Located in intron of: ENSMICG00000017713

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ZFAND2A
• Ensembl ID: ENSMICG00000002112
• Aliases: None
• Description: zinc finger, AN1-type domain 2A [Source:HGNC Symbol;Acc:28073]

Sequence

>retro_mmur_441
AAGTTTCCTGGTTTGGGGAAGCATTGTTCAGAAAAAACTTGCAAGCAGCTAGATTTTCTTCCTTTAAAATGTGATGCATG
TAAACAAGATTTCTGTAAAGATCATTTAACATGTGCTTCACACAGATGTCCTTTGCATTTGAGGAGGGTGTGCAGGTCCT
GGTGTGCCCACTTTGTAATAGCCCCAACCTTGTAAAAAAAAGACAAGGAGTGATATCAGATGCAGTGGTTGGCGATCACA
CTGATAGAGACTATAAATATCATCCTGGGAAGAATAAAAAG

Alignment

ORF - retro_mmur_441 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 68.42 %
• Parental protein coverage: 97.87 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  EFPDLGKHCSEKTCKQLDFLPLKCDACKQDFCKDHFACAAHRCP-FAFKKDVHVPVCPLCNVP--IPVKK
          .FP.LGKHCSEKTCKQLDFLPLKCDACKQDFCKDH..CA.HRCP.FAF...V.V.VCPLCN.P.......
Retrocopy KFPGLGKHCSEKTCKQLDFLPLKCDACKQDFCKDHLTCASHRCP<FAFEEGVQVLVCPLCNSPNLXXXXQ

Parental  GEIPDVVVGNHMDTDCKFQPGRSKK
          G.I.D.VVG.H.D.D.K..PG..KK
Retrocopy GVISDAVVGDHTDRDYKYHPGKNKK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_441 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_441 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 6 parental genes, and 8 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000015776	1 retrocopy	retro_cjac_2957,
Loxodonta africana	ENSLAFG00000005496	1 retrocopy	retro_lafr_211,
Microcebus murinus	ENSMICG00000002112	1 retrocopy	retro_mmur_441 ,
Monodelphis domestica	ENSMODG00000025494	1 retrocopy	retro_mdom_34,
Sarcophilus harrisii	ENSSHAG00000000364	2 retrocopies	retro_shar_756, retro_shar_779,
Tupaia belangeri	ENSTBEG00000007079	2 retrocopies	retro_tbel_2636, retro_tbel_2697,