RetrogeneDB ID: retro_mmur_31

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: GeneScaffold_558:135597..136488(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMICG00000007363
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMICG00000005966
• Aliases: None
• Description: None

Sequence

>retro_mmur_31
TTAAAGTTTTTCAAGCCTGGCCAAGAAGCTGTGAAGTACCAGGGTCCTCGGGACTTCCAGACGCTGGAAAACTGGATGCT
GCAGACGCTGAACCAGGAGCCGGCGACACCAGAGCCAGCAGTAGAACCGCCCAGAGCCCCTGAGCTCAAGCAGGGGCTGT
ACGAGCTCTCAGCGAGCAACTTTGAGCCGCATGTCGCACAAGGCGACCACTTTATCAAGTTCTTCGCTCCGTGGTGTGGT
CACTGCAAAGCCCTGGCTCCGACCTGGGAGCAGCTGGCGCTGGGCCTTGAACATTCCGAAACTGTCAAGATTGGCAAGGT
CGATTGTACACAGCACTACGAGCTCTGCTCGGGGAACCAGGTCCGCGGCTATCCCACTCTGCTGTGGTTCCGAGACGGGA
AGAAGGTTGACCAGTACAAAGGGAAGCGGGATTTGGAGTCCCTGAGAGAGTACGTGGAGTCACAGCTGCAGAGGACAGAG
CCGGGCGCCCCAGAGACCGAGACTGCTGCGCCCTCGGACGCCCCCGGGCTGGCCGCCAAGCCCGAGGCCAGCAAGGGCAC
TGTGTTGGCGCTCACTGAAAATAACTTCGATGACACTATTGCAGAAGGAATAACCTTTGTCAAGTTTTATGCTCCATGGT
GTGGTCATTGTAAGAATTTGGCTCCTACCTGGGAGCAACTTGCTAAAAAGGAATTCCCTGGTTTGGCAGAGGTCAAGATC
GCTGAAGTAGACTGCACGGCAGAGCGGAATACTTGCAGCAAGTACTCGGTACGAGGCTATCCCACGTTGTTGCTTTTCCG
TGGAGGGCAGAAAGTCAGTGAGCACAGTGGAGGGAGAGACCTCGAATCGTTACACCGCTTTGTCCTGGGCCAGGCCAAAG
ACGAGCTGTAG

Alignment

ORF - retro_mmur_31 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 98.65 %
• Parental protein coverage: 85.55 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  LKFFKPGQEAVKYQGPRDFQTLENWMLQTLNQEPATPEPAVEPPRAPELKQGLYELSASNFEPHVAQGDH
          LKFFKPGQEAVKYQGPRDFQTLENWMLQTLNQEPATPEPAVEPPRAPELKQGLYELSASNFEPHVAQGDH
Retrocopy LKFFKPGQEAVKYQGPRDFQTLENWMLQTLNQEPATPEPAVEPPRAPELKQGLYELSASNFEPHVAQGDH

Parental  FIKFFAPWCGHCKALAPTWEQLALGLEHSETVKIGKVDCTQHYELCSGNQVRGYPTLLWFRDGKKVDQYK
          FIKFFAPWCGHCKALAPTWEQLALGLEHSETVKIGKVDCTQHYELCSGNQVRGYPTLLWFRDGKKVDQYK
Retrocopy FIKFFAPWCGHCKALAPTWEQLALGLEHSETVKIGKVDCTQHYELCSGNQVRGYPTLLWFRDGKKVDQYK

Parental  GKRDLESLREYVESQLQRTEPGAPETETAAPSEAPGLAAEPEASKGTVLALTENNFDDTIAEGLTFVKFY
          GKRDLESLREYVESQLQRTEPGAPETETAAPS.APGLAA.PEASKGTVLALTENNFDDTIAEG.TFVKFY
Retrocopy GKRDLESLREYVESQLQRTEPGAPETETAAPSDAPGLAAKPEASKGTVLALTENNFDDTIAEGITFVKFY

Parental  APWCGHCKNLAPTWEELAKKEFPGLAEVKIAEVDCTAERNTCSKYSVRGYPTLLLFRGGQKVSEHSGGRD
          APWCGHCKNLAPTWE.LAKKEFPGLAEVKIAEVDCTAERNTCSKYSVRGYPTLLLFRGGQKVSEHSGGRD
Retrocopy APWCGHCKNLAPTWEQLAKKEFPGLAEVKIAEVDCTAERNTCSKYSVRGYPTLLLFRGGQKVSEHSGGRD

Parental  LESLHRFVLGQAKDEL
          LESLHRFVLGQAKDEL
Retrocopy LESLHRFVLGQAKDEL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_31 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_31 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 7 retrocopies.

Species	Parental gene accession	Retrocopies number
Choloepus hoffmanni	ENSCHOG00000002184	4 retrocopies	retro_chof_1163, retro_chof_2176, retro_chof_2312, retro_chof_663,
Callithrix jacchus	ENSCJAG00000021322	2 retrocopies	retro_cjac_1041, retro_cjac_4180,
Microcebus murinus	ENSMICG00000005966	1 retrocopy	retro_mmur_31 ,