RetrogeneDB ID: retro_mmur_1581

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: scaffold_86800:534..1486(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMICG00000012020
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: RRAGC
• Ensembl ID: ENSMICG00000006241
• Aliases: None
• Description: Ras-related GTP binding C [Source:HGNC Symbol;Acc:19902]

Sequence

>retro_mmur_1581
GTCGTCTTTCACAAAATGTCTCCCAACGAAACCCTGTTCCTGGAGAGCACTAACAAGATTTGCCGGGAAGACGTGTCCAA
CAGCTCCTTTGTCAATTTTCAGATTTGGGACTTCCCGGGACAGATTGACTTTTTTGACCCTACATTTGACTACGAGATGA
TCTTCAGGGGAACAGGAGCACTCATATTCGTCATCGACTCCCAGGACGATTACATGGAAGCCTTGGCCAGGCTGCACCTC
ACGGTGACCAGGGCCTACAAAGTGAATACCGACATCAGCTTCGAGGTGTTTATCCATAAAGTGGATGGTCTGTCAGATGA
CCACAAAATTGAAACCCAAAGAGATATTCACCAGAGGGCAAACGACGACCTTGCAGATGCTGGATTAGAAAAAATTCACC
TCAGCTTTTATCTGACAAGCATATATGATCATTCAATATTTGAAGCTTTTAGTAAGGTGGTTCAGAAACTGATTCCACAG
CTCCCAACTCGGGAGAATTTGCTAAAATATCTTTATCTCAAATTCTGGAATTGAAAAGGCATTTCTATTTGATGTGGTCA
GTAAAATTTATATTGCAACTGATAGTACTCCAGTGGATATGCAAACTTACGAGCTCTGCTGTGATATGATAGATGTGGTT
ATCGACATCTCTTGTATTTATGGTCTCAAAGAAGATGGAGCAGGAACCCCCTACGACAAGGAATCAACAGCCATTATAAA
GCTGAATAATACAACAGTTCTTTATTTAAAAGAGGTGACAAAGTTCCTGGCTCTCGTTTGCTTTGTCAGAGAGGAAAGCT
TTGAAAGAAAAGGGCTTATTGACTATAATTTTCATTGCTTTCGGAAGGCCATCCATGAAGTTTTTGAGGTGAGGATGAAA
GTAGTGAAATCTCGAAAAGTTCAGAATCGGCTGCAGAAGAAAAAAGGAGCCACCCCTAATGGGACACCGAGA

Alignment

ORF - retro_mmur_1581 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 85.85 %
• Parental protein coverage: 99.06 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  VVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDD
          VVFHKMSPNETLFLESTNKI...D.SNSSFVNFQIWDFPGQ.DFFDPTFDYEMIFRGTGALI.VID.QDD
Retrocopy VVFHKMSPNETLFLESTNKICREDVSNSSFVNFQIWDFPGQIDFFDPTFDYEMIFRGTGALIFVIDSQDD

Parental  YMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFYLTS
          YMEAL.RLH.TV..AYKVN.D..FEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEK.HLSFYLTS
Retrocopy YMEALARLHLTVTRAYKVNTDISFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKIHLSFYLTS

Parental  IYDHSIFEAFSKVVQKLIPQLPTLENLL-NIFISNSGIEKAFLFDVVSKIYIATDSSPVDMQSYELCCDM
          IYDHSIFEAFSKVVQKLIPQLPT.ENLL.NIFISNSGIEKAFLFDVVSKIYIATDS.PVDMQ.YELCCDM
Retrocopy IYDHSIFEAFSKVVQKLIPQLPTRENLL>NIFISNSGIEKAFLFDVVSKIYIATDSTPVDMQTYELCCDM

Parental  IDVVIDVSCIYGLKEDGSGSAYDKESMAIIKLNNTTVLYLKEVTKFLALVCILREESFERKGLIDYNFHC
          IDVVID.SCIYGLKEDG.G..YDKES.AIIKLNNTTVLYLKEVTKFLALVC..REESFERKGLIDYNFHC
Retrocopy IDVVIDISCIYGLKEDGAGTPYDKESTAIIKLNNTTVLYLKEVTKFLALVCFVREESFERKGLIDYNFHC

Parental  FRKAIHEVFEVGVTSHRSCGHQTSAPSLKALAHNGTPR
          FRKAIHEVFEV......S...Q......K....NGTPR
Retrocopy FRKAIHEVFEVRMKVVKSRKVQNRLQKKKGATPNGTPR

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_1581 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_1581 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000009368	2 retrocopies	retro_btau_1023, retro_btau_851,
Microcebus murinus	ENSMICG00000006241	1 retrocopy	retro_mmur_1581 ,
Monodelphis domestica	ENSMODG00000017710	1 retrocopy	retro_mdom_1967,