RetrogeneDB ID: | retro_mmur_1237 | ||
Retrocopy location | Organism: | Mouse Lemur (Microcebus murinus) | |
| Coordinates: | scaffold_35131:4508..5080(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | MAPK14 | ||
| Ensembl ID: | ENSMICG00000008182 | ||
| Aliases: | None | ||
| Description: | mitogen-activated protein kinase 14 [Source:HGNC Symbol;Acc:6876] |
Retrocopy-Parental alignment summary:
>retro_mmur_1237
ATCCTGGACTTTTGACTGGCCTGGCATACAGATGATGAAATGACAGGCTACGCAGCCACTAAGTGGTACAGGGCTCCTGA
GATCATGCTGAACAGGATGCATTACTAATAGATTAGTTGATATTTGGGTCAGTGGGATGCATAATGTCCAAGCTGTTGAC
TGGAAGAACACTGTTTCCTGGTCTAGACTATATTGATCAGTTGAAGCTCATTTTAAGACTAGTTAGAAGGCTGGGGACTG
AGCTTTTGAAGAAAATCTCTTCAGAGTCTGCAAGAAACTATATTCAGTCTTTGACTCAGATGCTGAAGATGAACCTTGCA
GGTATATTTATTGGTGCCAATCCTTTGGGTGTTGACTTGCTGGAGAAGATGCTTGTATTGGACTCAGATAAGAGAATTAC
AGCAGACCAAACCCTTGCACATGCCTACTTTACTCAATACCATGATGCTGATGATGAGTCAGTGGCCGACCCTTACAAAA
GCAAAGACCTCCTCACAGATGAGTGGAAAAGCCTGACTTACAATGAAGTCATCAGCTTTGTGCTGCCAACCCCTTTCCAA
GAAGAGATAGAG
ORF - retro_mmur_1237 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 79.59 % |
| Parental protein coverage: | 60.44 % |
| Number of stop codons detected: | 1 |
| Number of frameshifts detected: | 2 |
Retrocopy - Parental Gene Alignment:
| Parental | ILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHY-NQTVDIW-SVGCIMAELLTGRTLFPGTDHIDQLK |
| ILDF.LA.HTDDEMTGY.AT.WYRAPEIMLN.MHY.N..VDIW.SVGCIM..LLTGRTLFPG.D.IDQLK | |
| Retrocopy | ILDF*LAWHTDDEMTGYAATKWYRAPEIMLNRMHY>NRLVDIW>SVGCIMSKLLTGRTLFPGLDYIDQLK |
| Parental | LILRLVGTPGAELLKKISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQAL |
| LILRLV...G.ELLKKISSESARNYIQSLTQM.KMN.A..FIGANPL.VDLLEKMLVLDSDKRITA.Q.L | |
| Retrocopy | LILRLVRRLGTELLKKISSESARNYIQSLTQMLKMNLAGIFIGANPLGVDLLEKMLVLDSDKRITADQTL |
| Parental | AHAYFAQYHDPDDEPVADPYDQSFESRDLLIDEWKSLTYDEVISFVPPPLDQEEME |
| AHAYF.QYHD.DDE.VADPY.....S.DLL.DEWKSLTY.EVISFV.P...QEE.E | |
| Retrocopy | AHAYFTQYHDADDESVADPY----KSKDLLTDEWKSLTYNEVISFVLPTPFQEEIE |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Microcebus murinus was not studied using RNA-Seq expression data.
Microcebus murinus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mmur_1237 retrocopy.
Microcebus murinus was not studied using FANTOM5 data.
retro_mmur_1237 was not experimentally validated.
Retrocopy orthology:
Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 2 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Microcebus murinus | ENSMICG00000008182 | 2 retrocopies |
retro_mmur_1237 , retro_mmur_304,
|