RetrogeneDB ID: | retro_mmur_304 | ||
Retrocopy location | Organism: | Mouse Lemur (Microcebus murinus) | |
| Coordinates: | GeneScaffold_2314:78599..79175(-) | ||
| Located in intron of: | ENSMICG00000011181 | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | MAPK14 | ||
| Ensembl ID: | ENSMICG00000008182 | ||
| Aliases: | None | ||
| Description: | mitogen-activated protein kinase 14 [Source:HGNC Symbol;Acc:6876] |
Retrocopy-Parental alignment summary:
>retro_mmur_304
GTCCTGGACTTTGGACTGGCCCAACACGCAGATGAGGAAATGACAGCCTACATGGCCACTAGATGGTACAGGACTCCTGA
GACCATGCCGAACTAGATGCATTACAACCAGACAGTTTATATTTGGTCAGTGGGCTACATAATGGCCGAGACTGGAAGAA
CATTGCTTCCTGGTACAGACCACATTAACCAGCTTCAGCAGGTCATGCGTCTGACGGGGACACCCCCTGCTTCTCTCATT
AACAGGATGCCAAGCCATGAGGCAAGAAAGTGTATTCAGTCTTTGATCCAGATGCTGAAGATGAACTTTGCAAATGTATT
TATTGGTGCCAATCCTTTGGCCGTTGACTTGCTGGAAATGCTTCTATTGGACTCAGATAAGAGAATTATAGCAGCCCAGG
CCCTTGTACATGCATACTTTGCTCAGTACCATGACTCTGATGATGAGCCAGTGGCCAACCCTTCCGGTCAGTCCTTTGAA
AGCGGGGACCTTCTCATAGATGAGTGGAAAAGCCTGACCTACAATGAAGTCATCAGCTTTGGGCTGCCACCCCTTGACCA
AGAAGAGATGGAGTCC
ORF - retro_mmur_304 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 76.41 % |
| Parental protein coverage: | 60.75 % |
| Number of stop codons detected: | 1 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | ILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLI |
| .LDFGLA.H.D.EMT.Y.ATRWYR.PE.M.N.MHYNQTV.IWSVG.IMAE..TGRTL.PGTDHI.QL... | |
| Retrocopy | VLDFGLAQHADEEMTAYMATRWYRTPETMPN*MHYNQTVYIWSVGYIMAE--TGRTLLPGTDHINQLQQV |
| Parental | LRLVGTPGAELLKKISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALAH |
| .RL.GTP.A.L.....S..AR..IQSL.QM.KMNFANVFIGANPLAVDLLE.ML.LDSDKRI.AAQAL.H | |
| Retrocopy | MRLTGTPPASLINRMPSHEARKCIQSLIQMLKMNFANVFIGANPLAVDLLE-MLLLDSDKRIIAAQALVH |
| Parental | AYFAQYHDPDDEPVADPYDQSFESRDLLIDEWKSLTYDEVISFVPPPLDQEEMES |
| AYFAQYHD.DDEPVA.P..QSFES.DLLIDEWKSLTY.EVISF..PPLDQEEMES | |
| Retrocopy | AYFAQYHDSDDEPVANPSGQSFESGDLLIDEWKSLTYNEVISFGLPPLDQEEMES |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Microcebus murinus was not studied using RNA-Seq expression data.
Microcebus murinus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mmur_304 retrocopy.
Microcebus murinus was not studied using FANTOM5 data.
retro_mmur_304 was not experimentally validated.
Retrocopy orthology:
Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 2 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Microcebus murinus | ENSMICG00000008182 | 2 retrocopies |
retro_mmur_1237, retro_mmur_304 ,
|