RetrogeneDB ID: retro_mmur_1103

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: scaffold_22480:6676..7321(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: GNAI1
• Ensembl ID: ENSMICG00000011752
• Aliases: None
• Description: guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 1 [Source:HGNC Symbol;Acc:4384]

Sequence

>retro_mmur_1103
TGGAACAGGATGATCCACCGCAGCTTGCTGGAGGACATGCATAAAGTGGCAGATGATTTGGGTAGACTATCCCAAACCAA
CTACATTCCAACTCAGCAACATATTCTTCAGATGAGAGTGAAGGCTAACTTACCATGGAAGCGCATTTCACCTTCAAAAA
CCTATACTTCAAGATGTTTGATGTAAAAGGCCAGAGATCAGAACAAAAAGAGTGGATTCACTGTTCTGAAGGAATGACAG
CAGTTATCTTCTGTGCATCCCTCAGTGATCGTGACCTTATTCTGGCTGAGGATGAGGAGATTAATTGAATGCAAGAAAGC
ATGAAATTATTATATGGTATTTACAATAACAAATGGGTTCCAGACACTTCCATCATCCTCTTCCTTAACAAGAAAGACCT
TTTTGCAGGAAAAATAAAGAAGAGCCCAACTAACTGTCTGTTATCCAGAATACACAGGTTCCCATACATATGAAGAGGCA
GCTGCTTATACCCAGTGCCAGTCGGAAGATCTGAACAGAAGAAAAGATACCAAGGAGATCTACACTCATTTCACCTGTGC
CACAGACACCAAGAATGTGCAGTTCATTTTTGATGCTGTAGCAGATGTCATCATTAAAAACAACTGAAAGGAACATGGGC
TTTAT

Alignment

ORF - retro_mmur_1103 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 68.95 %
• Parental protein coverage: 92.74 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  FNRSREYQLNDSAAYYLNDLDRIAQPNYIPTQQDVLRTRVKTTG-IVETHFTFKDLHFKMFDVGGQRSER
          .NR.....L.........DL.R..Q.NYIPTQQ..L..RVK......E.HFTFK.L.FKMFDV.GQRSE.
Retrocopy WNRMIHRSLLEDMHKVADDLGRLSQTNYIPTQQHILQMRVKANL<TMEAHFTFKNLYFKMFDVKGQRSEQ

Parental  KKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMAMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEE
          K.WIHC.EG.TA.IFC..LSD.DL.LAEDEE...N.M.ESMKL...I.NNKW..DTSIILFLNKKDLF..
Retrocopy KEWIHCSEGMTAVIFCASLSDRDLILAEDEEI--N*MQESMKLLYGIYNNKWVPDTSIILFLNKKDLFAG

Parental  KIKKSP-LTICYPEYGGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIK
          KIKKSP.LT.CYPEY.GS.TYEEAAAY.QCQ.EDLN.RKDTKEIYTHFTCATDTKNVQF.FDAV.DVIIK
Retrocopy KIKKSP>LTVCYPEYTGSHTYEEAAAYTQCQSEDLNRRKDTKEIYTHFTCATDTKNVQFIFDAVADVIIK

Parental  NNLKDCGLF
          NN.K..GL.
Retrocopy NN*KEHGLY

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_1103 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_1103 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Ciona intestinalis	ENSCING00000005305	1 retrocopy	retro_cint_14,
Ciona savignyi	ENSCSAVG00000001800	1 retrocopy	retro_csav_19,
Danio rerio	ENSDARG00000021647	1 retrocopy	retro_drer_19,
Microcebus murinus	ENSMICG00000011752	1 retrocopy	retro_mmur_1103 ,