RetrogeneDB ID: retro_mluc_992

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429787:1160438..1160923(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: FKBP6
• Ensembl ID: ENSMLUG00000009844
• Aliases: None
• Description: None

Sequence

>retro_mluc_992
ATAGACAAGCCTTTTGATTCTAATTGTTTTAGGGAAACTCCTGGGCTCATGAAGCTTGGAGAGGATACTCCACTTGGGGG
CATGGAGCTGGGCCTTCTGAGCATGCGGAGGGGAGAGCTGGCTAGGTTTCTGTTCAAACCAACCTATGCTTATGAACACT
GGGCAACCTACCCTTGATCCCCAAAACTCCACCGTCTGATTCCAGACTGAGCTATTTGACTTCCTGGATTATATTGAATC
AGACAAGTTTTGTGCCCTGTCAGCTGAGGAACAAGATCAATTTCTACTTCTGAGGTCCTAAAAGTGGCAGCTACTGAACC
GAGTTTGGCAAGTAGTTTTTCTGCCAAAGTCGTTTCTATGGTGCCAAAGTGAGAGATAAATGGGCCTTATTGCTTCTCCA
CTGGCAAGCAGCACCCGCTGAAGAAGCTGCCAAGCTTCTCGTGCTCTGTAACCTCTCCTTTAACTACCTGTGGCTGGACC
CACCC

Alignment

ORF - retro_mluc_992 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 69.19 %
• Parental protein coverage: 51.53 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 4

Retrocopy - Parental Gene Alignment:

Parental  MDKPFDSNCFRKTPRLMKLGVDITLWGMELGLLTMRRGELARFLFKPPYAYG-TLGCPPLIPP-NSTVLF
          .DKPFDSNCFR.TP.LMKLG.D..L.GMELGLL.MRRGELARFLFKP.YAY..TLG..PLIP..NSTV.F
Retrocopy IDKPFDSNCFRETPGLMKLGEDTPLGGMELGLLSMRRGELARFLFKPTYAYE<TLGNLPLIPK<NSTV*F

Parental  EIELIDFLDSAESDKFCALTAEQQDQFPL-QKVLKVAATE-REFGNYLFRQNRFYDAKVRYKRALLLLCR
          ..EL.DFLD..ESDKFCAL.AE.QDQF.L...VLKVAATE..EFG...F.Q.RFY.AKVR.K.ALL.L..
Retrocopy QTELFDFLDYIESDKFCALSAEEQDQFLL<SEVLKVAATE<TEFGK*FFCQSRFYGAKVRDKWALL-LLH

Parental  RSAPPEEQHLVEAAKLLVLLNLSFTYLKLEHP
          ..A.P.E....EAAKLLVL.NLSF.YL.L..P
Retrocopy WQAAPAE----EAAKLLVLCNLSFNYLWLDPP

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_992 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000009844	1 retrocopy	retro_mluc_992 ,