RetrogeneDB ID: | retro_mluc_936 | ||
Retrocopy location | Organism: | Microbat (Myotis lucifugus) | |
| Coordinates: | GL429784:12528860..12531536(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | ENSMLUG00000029022 | |
| Aliases: | None | ||
| Status: | KNOWN_PSEUDOGENE | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | SF3B2 | ||
| Ensembl ID: | ENSMLUG00000011136 | ||
| Aliases: | None | ||
| Description: | None |
Retrocopy-Parental alignment summary:
>retro_mluc_936
ATGGCGGCCGAACATCCCGAGCCTCCCAAGGGAGAGTTGCAGCTGCCGCCGCCACCTCCTGGTCACTATGGCGCCTGGGC
TGCCCAGGAGCTTCAGGCCAAATTGGCAGAGATCGGAGCTCCCATCCAAGCAGGGAGTCGCGAGGAGCTAGTGGAACGGC
TGCAGAGCTACACCCGCCAGACTGGTCTTGTACTGAATCGGTTGGTTCTGAGAGGTGAAGATGGGGACAAAGCAGCTCCG
CCTCCCATGTCAGCACAGCTCACTGGGATTCCAATGCCACCGCCACCCATGGGCCTCCCCCCTCTGCAGCCTCCTCCACC
ACCTCCACCAGGCCTTGGTCTTGGTTTTCCTAAGGTAGTTGGACCCCGCCCACCAAACTTGGGGCCCCCACCTCCTCTCC
GTGTGGGTGAGCCTGTGGCGTTGTCAGAGGAGGAGCGGCTGAAGCTGGCGCAGCAGCAGGCAGCGTTGTTGATGCAGCAA
GAGGAGCGGGCCAAGCAGCAAGGAGATCATTCACTAAAGGAACATGAGCTCTTGGAGCAACAGAAGCGGGCAGCTGTGTT
ACTGGAGCAAGAACGGCAGCAGGAGATTGCCAAGATGGGCAGCCCAGTCCCTCAGCCCCCACAAGACATGGGCCAAATTG
GTGTTCGCACTCCTCTGGGTCCTCGAGGATTGGTTGCTGCTCCAGTGGGCCCCACTCCTACTGTTTTGCCCATGGGGGCC
CCGGTTCCCCCGCCACGTGGTCCCCCACCACCCCTTGGAGATGAGAACAGAGAGATGGACGACCCCTCTGTGGGCCCCAA
GATCCCCCAGGCTTTGGAAAAGATCCTGCAGCAGAAAGAGAGCCGCCAGGAAGAGATGAACTCTCAACAGGAGGAAGAGG
AAATGGAAACAGACACACGCTCATCCCTGGGCCAGTCAGCATCAGAGACTGAGGAGGACTCAGTGTCCTTATTCAAAAAA
GAGAAAAACCGGAAGCGTCGCAACCGAAAGAAGAAAAAGCTCCAGCGGGTACGAGGGGTGTCATCTGAGAGTTCTGGGGA
CCGAGAGAAAGAGTCAACCCGGTCCTGTGGCTCTGAGTCCTCAGTTGCTGATGTTGAAATTGAATATGTGACTGAAGAAC
CTGAAATTTATGAGCCCAACTTCATCTTCTTCAAGAGGATTTTTGAGGCTTTCAAGCTCACCGGTGATGTGAAGGAGAAA
GAGAAGGAGCCAGAGAAACTCGACAAACTGGAGAACTCTGCAGCCCCCAAGAAGAAGGGCTTTGAGGAGGAGCACAAGGA
CAACGATGATGATAGCAGCGATGACGAACTGGAAAAGAAGCCAGAAGCCCCTAAGCTGTCCAAGAAGAAGTTGCGCCGAA
TGAATCGCTTCACTGTGGCTGAACTCAAGCAGCTGGTGGCTCGGCCTGATGTTGTGGAGATGCATGATGTGACAGCACAG
GACCCTAAGCTCTTGGTCCACCTCAAGGCCACTCGTAATTCTGTGCCTGTGTCACGCCACTGGTGTTTGAAGCGCAAGTA
CCTGCAGGGCAAACGAGGCATTGAGAAGCCCCCCTTTGAGCTGCCGGACTTCATCAAACGCACAGGCATCCAGGAGATGC
GGGAGGCCCTGCAGGAGAAGGAAGAACAGCAGACTATGAAGTAAAAAATGCGAGAGAAGGTTCGGCCTAAGATGGGGAAG
ATCGACATTGACTACCAGAAACTGCATGATGCCTTCTTCAAGTGGAAGACCAAGCCGAAGCTGACCATCCATGGGGACCT
GTACTATGAGGGGAAGGAGTTTGAGACACGACTGAAGGAGAAGAAGCCAGGAGATCTGTCCGACGAGCTAAGGATTTCCT
TGGGGATGCCAGTAGGACCAAATGCTCACAAAGTTCCTTACCCGTGGCTGATTGCCATGCAGCGATATGGACCACCCCCA
TCATACCCAAACTTGAAAATCCCTGGGCTGAACTCACCCATCCCTGAGAGCTGTTCCTTTGGGTACCATGCTGGTGGCTG
GGGCAAACCACCAGTAGATGAAACCGGGAAACCACTCTATGGGGATGTATTTGGAACCAATGCCGCTGAATTTCAGACCA
AGACTGAGGAAGAAGAGATTGATCGGACTCCTTGGGGGGAGCTGGAGCCATCTGATGAAGAGTCTTCAGAAGAAGAGGAA
GAGGAGGAAAGTGATGAAGACAAGCCAGATGAAACAGGCTTTATTACCCCTGTAGACAGTGGCCTCATCACTCCTGGAGG
ATTCTCGTCAGTGTCAGCTGGAATGGAGACTCCTGAACTCATTGAGCTGAGGAAGAAGAAGATTGAGGAAGCGATGGATG
GAAGCGAGACACCTCAGCTGTTCACTGTGTTACCGGAGAAGAGAACGGCCACCGTTGGGGGAGCCATAATGGGATCGACC
CACATCTATGACATGTCCATGGTTATGAGCCATAAGGGCCCGGCGCCTGAGCTACAAGGTGTGGAAGTGGCTCTGGTACC
TGAAGAGTTAGAGCTGGACCCCATGGCCATGACCCAGAAGTATGAGGACCATGTAAGGGAGCAGCAGGCACAAGTGGAGA
AGGAAGACTTCAGTGACATGGTGGCTGAGCATGCTGCCAAACAGAAGCAGAAGAAACAGAAAGCTCAGCCTCAGGACAGC
CGTGGGAGCAGCAAGAAATACAAGGAGTTCAAATTT
ORF - retro_mluc_936 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 95.32 % |
| Parental protein coverage: | 100.0 % |
| Number of stop codons detected: | 1 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | MAAEHPEPPKGELQLPPPPPPGHYGAWAVQELQAKLAEIGAPIQAGSREELVERLQSYTRQTGIVLNRPV |
| MAAEHPEPPKGELQLPPPPP.GHYGAWA.QELQAKLAEIGAPIQAGSREELVERLQSYTRQTG.VLNR.V | |
| Retrocopy | MAAEHPEPPKGELQLPPPPP-GHYGAWAAQELQAKLAEIGAPIQAGSREELVERLQSYTRQTGLVLNRLV |
| Parental | LRGEDGDKAAPPPMSAQLTGIPMPPPPMGLPPLQPPPPPPPPPPGLGLGFPMAVGPRPPNLGPPPPLRVG |
| LRGEDGDKAAPPPMSAQLTGIPMPPPPMGLPPLQ...PPPPPPPGLGLGFP..VGPRPPNLGPPPPLRVG | |
| Retrocopy | LRGEDGDKAAPPPMSAQLTGIPMPPPPMGLPPLQ---PPPPPPPGLGLGFPKVVGPRPPNLGPPPPLRVG |
| Parental | EPVALSEEERLKLAQQQAALLMQQEERAKQQGDHSLKEHELLEQQKRAAVLLEQERVQEIAKMGSPVPRP |
| EPVALSEEERLKLAQQQAALLMQQEERAKQQGDHSLKEHELLEQQKRAAVLLEQER.QEIAKMGSPVP.P | |
| Retrocopy | EPVALSEEERLKLAQQQAALLMQQEERAKQQGDHSLKEHELLEQQKRAAVLLEQERQQEIAKMGSPVPQP |
| Parental | PQDMGQIGVRTPLGPR--VAAPVGPTPTVLPMGAPVPRPRGPPPPPGDENREMDDPSVGPKIPQALEKIL |
| PQDMGQIGVRTPLGPR..VAAPVGPTPTVLPMGAPVP.PRGPPPP.GDENREMDDPSVGPKIPQALEKIL | |
| Retrocopy | PQDMGQIGVRTPLGPRGLVAAPVGPTPTVLPMGAPVPPPRGPPPPLGDENREMDDPSVGPKIPQALEKIL |
| Parental | QLKESRQEEMNSQQEEEEMETDTRSSLGQSASETEEDSVSVSKKEKNRKRRNRKKKKKPQRVRGVSSESS |
| Q.KESRQEEMNSQQEEEEMETDTRSSLGQSASETEEDSVS..KKEKNRKRRNRKKKK..QRVRGVSSESS | |
| Retrocopy | QQKESRQEEMNSQQEEEEMETDTRSSLGQSASETEEDSVSLFKKEKNRKRRNRKKKKL-QRVRGVSSESS |
| Parental | GHREKEPARSRGSESSAADVEIEYVTEEPEIYEPNFIFFKRIFEAFKLTDDVKKEKEKEPEKLDKLENSA |
| G.REKE..RS.GSESS.ADVEIEYVTEEPEIYEPNFIFFKRIFEAFKLT.DVK.EKEKEPEKLDKLENSA | |
| Retrocopy | GDREKESTRSCGSESSVADVEIEYVTEEPEIYEPNFIFFKRIFEAFKLTGDVK-EKEKEPEKLDKLENSA |
| Parental | APKKKGFEEEHKDSDDDSSDDELEKKPEAPKLSKKKLRRMNRFTVAELKQLVARPDVVEMHDVTAQDPKL |
| APKKKGFEEEHKD.DDDSSDDELEKKPEAPKLSKKKLRRMNRFTVAELKQLVARPDVVEMHDVTAQDPKL | |
| Retrocopy | APKKKGFEEEHKDNDDDSSDDELEKKPEAPKLSKKKLRRMNRFTVAELKQLVARPDVVEMHDVTAQDPKL |
| Parental | LVHLKATRNSVPVPRHWCFKRKYLQGKRGIEKPPFELPDFIKRTGIQEMREALQEKEEQKTMKSKMREKV |
| LVHLKATRNSVPV.RHWC.KRKYLQGKRGIEKPPFELPDFIKRTGIQEMREALQEKEEQ.TMK.KMREKV | |
| Retrocopy | LVHLKATRNSVPVSRHWCLKRKYLQGKRGIEKPPFELPDFIKRTGIQEMREALQEKEEQQTMK*KMREKV |
| Parental | RPKMGKIDIDYQKLHDAFFKWQTKPKLTIHGDLYYEGKEFETRLKEKKPGDLSDELRISLGMPVGPNAHK |
| RPKMGKIDIDYQKLHDAFFKW.TKPKLTIHGDLYYEGKEFETRLKEKKPGDLSDELRISLGMPVGPNAHK | |
| Retrocopy | RPKMGKIDIDYQKLHDAFFKWKTKPKLTIHGDLYYEGKEFETRLKEKKPGDLSDELRISLGMPVGPNAHK |
| Parental | VPPPWLIAMQRYGPPPSYPNLKIPGLNSPIPESCSFGYHAGGWGKPPVDETGKPLYGDVFGTNAAEFQTK |
| VP.PWLIAMQRYGPPPSYPNLKIPGLNSPIPESCSFGYHAGGWGKPPVDETGKPLYGDVFGTNAAEFQTK | |
| Retrocopy | VPYPWLIAMQRYGPPPSYPNLKIPGLNSPIPESCSFGYHAGGWGKPPVDETGKPLYGDVFGTNAAEFQTK |
| Parental | TEEEEIDRTPWGELEPSDEESSEEEEEEESDEDKPDETGFITPADSGLITPGGFSSVPAGMETPELIELR |
| TEEEEIDRTPWGELEPSDEESSEEEEEEESDEDKPDETGFITP.DSGLITPGGFSSV.AGMETPELIELR | |
| Retrocopy | TEEEEIDRTPWGELEPSDEESSEEEEEEESDEDKPDETGFITPVDSGLITPGGFSSVSAGMETPELIELR |
| Parental | KKKIEEAMDGSETPQLFTVLPEKRTATVGGAIMGSTHIYDMSTVMSRKGPAPELQGVEVALAPEELELDP |
| KKKIEEAMDGSETPQLFTVLPEKRTATVGGAIMGSTHIYDMS.VMS.KGPAPELQGVEVAL.PEELELDP | |
| Retrocopy | KKKIEEAMDGSETPQLFTVLPEKRTATVGGAIMGSTHIYDMSMVMSHKGPAPELQGVEVALVPEELELDP |
| Parental | MAMTQKYEEHVREQQAQVEKEDFSDMVAEHAAKQKQKKRKAQPQDSRGGSKKYKEFKF |
| MAMTQKYE.HVREQQAQVEKEDFSDMVAEHAAKQKQKK.KAQPQDSRG.SKKYKEFKF | |
| Retrocopy | MAMTQKYEDHVREQQAQVEKEDFSDMVAEHAAKQKQKKQKAQPQDSRGSSKKYKEFKF |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Myotis lucifugus was not studied using RNA-Seq expression data.
Myotis lucifugus was not studied using ChIP-Seq data.
Myotis lucifugus was not studied using EST data.
Myotis lucifugus was not studied using FANTOM5 data.
retro_mluc_936 was not experimentally validated.
Retrocopy orthology:
Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 2 parental genes, and 2 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Myotis lucifugus | ENSMLUG00000011136 | 1 retrocopy |
retro_mluc_936 ,
|
| Monodelphis domestica | ENSMODG00000008490 | 1 retrocopy |