RetrogeneDB ID: retro_mluc_93

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429781:1305167..1306649(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000026591
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000009764
• Aliases: None
• Description: None

Sequence

>retro_mluc_93
CGTGGCCGGATGGCTCTGTGCGGGCAGGCGGCGGGGGCCGAATCACTGCCCAGCGAGCTGATCGTGCACATCTTCTCCTT
CCTGCCGGCGGCCGACCGGCTGCGGGCCTCGGCCTCCTGCTCGCACTGGCGCGAGTGCCTCTTCCACCCGGCCCTCTGGC
CCGAGCTCCGCGTCTGCCTCCCGGTCTCCCGGGCGGAGCAGCCTCGGCTCGAGTTCCTCATGCGCAAGTGCGGCTGGTTC
GTGCGGGAGCTGCGCGTTGAGTTCGCCTCCGCGGATTACCTGAGCGGAGGCAGCGCGAACCCCGGGACCAGCGGGAAAGA
AGTCAAGGCCTTGCAGCTCTCTACCCCTTGGTTGGAAGAGCTGCGCACCTACTTGGAGCTGGTGCTGTGCGTGCTGGTCA
CCATCCGGAACAACAGGAACCTCCAGAAGTTTAGCCTTTTTGGAGATATAAGCGTTCCACAACAGCAAGGAAATTTGTCA
AATACATACCTCAGCAAGGTGGACCCTGATGGCAAAAAAATCAAGCAAATTCAGCAGCTGTTTGAAGAAATACTGAGTAA
TAGTAGGCGATTGAAATGGCTGTGCTGTGGGTTTATGCTGGAAATAGTAACCCCAACATCACTGCCATCTCTCTCAAACT
CTATTGCCAACACCATGGAGCACCTGAGTTTACTGGACAATATTCCTGGTAACAGCACCCTTATCACTACAGTGGAACTA
GAGCGATTTGTGAATCTGCGCTCACTTGCCCTGGACTTCTGTGACTTTACAGCTGAGATGGCAAGAGTCTTAAGCGATAG
CAACCATGTGCCTTTGCAGCGACTGTCTCTCCTGGTCCACCATGTTTCTGTGATGTACAAGTCTCTGGACAACATGCCAG
ATGATGAGCATTGGAAAGCCTTGTCACGAAGGAGCCCCAGCCTCCGGGTCTATATTATGGCTTTTGATATTATGAGTGAA
GATATGTTAAATATTCTGAAACCCAGTATACCACTAGAGAGGATTCATTTTGACAGCTACATCACTAGTGTTTCGGGAGC
TATTGTTGATCTTATATCTAGGCAATATGACAAGTTCCTCACTCATTTTATATTAATGAATGATGTGCTTGCCATGTCTG
GTTTTCCAGATCTTAGTGATAACCGAAACGAAGATCCATTGGTGTTGTTAGCGTGGAGATGCACAAAGCTTTCTCTTCTG
GCAATTCATGGTTACACAGTGTGGGCACACGACCTCATTGCCATTGCTCGTCTTCGTGGCTCTAATCTAAAAGTACTTGA
AGTCACTGAAGAAAGCATTGATTTTGACCCAGGTGAACTGGTCGACCAGGATGTGGATCCAGTGCATAACCTTATTGAGC
AGGTATCCCTGGGCATGGGTCAACCTTGGCACGCAGTCATGGACATCGAATCATTCAGTGTCTTCACTAAACCAAATCGT
CATTTTTACAGAGAGATGCAAAGCTTTAGCGAAGACATTTAG

Alignment

ORF - retro_mluc_93 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 92.73 %
• Parental protein coverage: 88.67 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  GGGADPGTGGEEVEALQLSARWLEVLRTYLELVLCVLVSIRNNRNLQKFSLFGDISVLQQQGNLSNTYLS
          GG.A.PGT.G.EV.ALQLS..WLE.LRTYLELVLCVLV.IRNNRNLQKFSLFGDISV.QQQGNLSNTYLS
Retrocopy GGSANPGTSGKEVKALQLSTPWLEELRTYLELVLCVLVTIRNNRNLQKFSLFGDISVPQQQGNLSNTYLS

Parental  KVDPDGKKIKQIQQLFEEILSNSRQLKWLSCGFMLEIVTPTSLSSLSNSIANTMEHLSLLDNNIPGNSTL
          KVDPDGKKIKQIQQLFEEILSNSR.LKWL.CGFMLEIVTPTSL.SLSNSIANTMEHLSLLD.NIPGNSTL
Retrocopy KVDPDGKKIKQIQQLFEEILSNSRRLKWLCCGFMLEIVTPTSLPSLSNSIANTMEHLSLLD-NIPGNSTL

Parental  ITTVELERFVNLRSLALDFCDFTAEMARVLSDSNHVPLQRLSLLVHNVSVMHKSLDNMPNDEHWKALSRR
          ITTVELERFVNLRSLALDFCDFTAEMARVLSDSNHVPLQRLSLLVH.VSVM.KSLDNMP.DEHWKALSRR
Retrocopy ITTVELERFVNLRSLALDFCDFTAEMARVLSDSNHVPLQRLSLLVHHVSVMYKSLDNMPDDEHWKALSRR

Parental  SPSLRVYIMAFDIKSEDMLKILKPSIPLERIHFDSYITCVSGAIVDLISRQYDKFLTHFILMNDVIDTSG
          SPSLRVYIMAFDI.SEDML.ILKPSIPLERIHFDSYIT.VSGAIVDLISRQYDKFLTHFILMNDV...SG
Retrocopy SPSLRVYIMAFDIMSEDMLNILKPSIPLERIHFDSYITSVSGAIVDLISRQYDKFLTHFILMNDVLAMSG

Parental  FPDLSDNRNEDPLVLLAWRCTKLSLLAIHGYTVWAHNLIAIARLRGSNLKVLEVTEESIDFDQGELADQD
          FPDLSDNRNEDPLVLLAWRCTKLSLLAIHGYTVWAH.LIAIARLRGSNLKVLEVTEESIDFD.GEL.DQD
Retrocopy FPDLSDNRNEDPLVLLAWRCTKLSLLAIHGYTVWAHDLIAIARLRGSNLKVLEVTEESIDFDPGELVDQD

Parental  VDPVHNLIEQVSLGLGQPWHAVMDIESLSVFTEPNRHFYREMQSFSEDI
          VDPVHNLIEQVSLG.GQPWHAVMDIES.SVFT.PNRHFYREMQSFSEDI
Retrocopy VDPVHNLIEQVSLGMGQPWHAVMDIESFSVFTKPNRHFYREMQSFSEDI

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_93 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000009764	1 retrocopy	retro_mluc_93 ,