RetrogeneDB ID: retro_mluc_880

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429780:12417982..12420933(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ANLN
• Ensembl ID: ENSMLUG00000008263
• Aliases: None
• Description: None

Sequence

>retro_mluc_880
CGGATGCAGAAGCTGGCAGCCCAGCAGCGCCACTGGGATAATGATGAGGTAACAGATGATACCCCTGAAAGCTCACTCAT
CCCAGCGATGCCAGCGGAGGACAAGGCGGCCTCCCCTCCCAAACCAGCAGAAGCCTTGGCAACAACTCCCGTGGGGAGGA
GGGGCCGTCTGGCAACCTTGCTGCCACTATTTGCTCTTGGGAAGATGATGTCAGTCTCTCATCGGCAAAGCAGAACAGTG
CCCCAGGACAGCCTGGCACCACTTGTTTGTCCAAATCTTCCTCTGCCAGCGGAGCATCTGCTGGCATCAATGTTGCGCAG
GAAGCCGCATGCTGCTCCCCGAGGGGTGGCCATGCCTCTCTGAGCAAAGCCCAGGCCTCGAGAGCCGCAGCCGTCTCCTT
GCCTACGGGTGCAGTTTCCAGCGCTGTGAAAGCTGCTTCTTCCCCTGTGAAAGCTTCTATATCTGTCACCAATGCTAAAA
ATTGTGAGGTAAGAAAACCTGAGCGACTTCAAAAAACTCCTGCTAGTCCTTTGAAAACAGAGGTATCGAAACCAATCGGG
AAATCGGCTGAATCCCAGACAGTTCGGCCCAAAAAGTAAGCAAATAGAGAAACTTGTCTGCAGTCTCACTCTAAAGACAA
ACCTACAACACCAGGAGCGGGAGTCAAGCCGTTTCTGGAGCGCTTCGGAGAGCACTGTCTAGAACGCAACGAAGACAGCC
CTGCTCGGAGCACACCCCACAGGACCCCCGTGGTCACTCCAAACACCAAGGCCATCCAGGAAAGACTGTTAAAGCAAAAC
ATATCTTCATCTACTACCCACGTAGCCCAGCGGCTCAAGCAGGAACGTGAAAAAGAACTAGCATGTCTTCGTGGCCGATT
TGACAAGGGCAATTTATGGAGTGCAGAAAAAGGCGAAAACTCAAGAAGCAAACAGCTAGAAACCACACAGAAAATTCACT
CTCAGAACATTCCCCTCAGAAAACATCAAGTTGTTTCAAATACCCCGTCCCATCCAGTAACAGAAAAGGAAAAGGCAGCA
GGAGAGCAGACTTCAGCACAGCCCCTGAGCCCAGAGCCCGCAGGTTTCACTGAATGTGAAATGACAAAGTCTAGCCCTTT
GAAAATAACACTGTTTTTAGAAGAGGAAAAGTCTTTAAAAATAACATCAGACCCAACGGTTGAGCAGCAGACCAAAGTTG
TACATGAGACTGAGATGAGCGTGGATGACAAGGATGACATCAATAGTTCGAAAGTGATTAACAACATCTTCAGTGATGTC
CTGCAGGAAGGAGAGCTGGATGTGGCCAGGAGCCCAGAGCAGATGGGCCAGGCAGGAGCCTAGAGCGGGGAGGACCAGGA
GGATGCCCTGAATATCTCCTCGATGTCGCTGCTTGCTCCGCTGGCACAGACAGTCGGCGTGGTAAGTCCAGAGAGTTTCG
CTTCCTTGCCTAGATTGGAACTGAAGGGCAGTAGCATACATGACGATAGTCCCAAACCAGGAAAGTTCCAGAGAACCCAT
GTCCCGCGGGCCGAGTCTGATGACAGCATTGGTTCTGAGGACCGTGACCTTCCTTACAGCATCGATGAGTACAGATCTCA
GAGAATCGAAGAAACAGACCGTCCTTCAATTAAGCAGATTGCTTGGAAGGAAGATGCTACTTCAAAATTGGAGGGAAAAA
GGAATGCTGAAGAAAAGAGCGTCTTTCCTTGTCAGGTGAACTTCAAGCAGAAAATGCAGGAACTCAACAATGAAATCAAT
CTGCAGCAGACGGTGATCTACCAGGCCAGCCAGGCCCTGAACTGCTGTATGGACGAGGAGCATGGGATGGGGTCCCTGGA
AGAAGCCGAGGCGGAAAGGCTGCTTCTGATCGCAACTGACAAGAGAACACTTTTGATTGATGATCTGAATAAACTGAAGA
GTGAGGGACCTCAGAGGAAGAACAAGGCTGGTCTCCTCTCCCAAAGTGAATTTGTCCCGTCCAAAGGGTCAGTCATTTTG
TCAGAAATCCGTTTGCCTTTCAAGGCAGATTTTGTCTGCAGCACAGTTCAGAAACCAGATGCAGCAACTTACTTCTTCCT
GATCATACTGAAGGCAGGAGCCGAGAACATGGTGGCCACCCCGCTGGCAAGCACTACCACTTCTCTGAATGGTGATGCCC
TGACGTTCTCCACTACTTACACTCTGGAAGATGTGTCCAATGACTTTGAAATCAGTATTGAAGTTTACAGCTTGGTGTAA
AAGAAAGATCCCTCAGTGCTAGATAAGAAGAAAAAGGCATACAAATCCAAGGCTATCACTTCAAAGTGACTTCTCACATC
TATAACTACAAAAAGAAACCTTCATTCTTCAGTGATGGCCAGCCCCTGCGGTCTCCATGCTGTGTGCACCAGCAACTTTA
TCCTTGTTGGATCTTACACGCTGTCCTTGTCTTCAGTAGGAAACACTAAGTTTGCTCTGGACAAGGTGCCCTTTTTATCT
CCTTTGGAAGGTCATATTTATTTAAAAATAAAATGTCAAGTGAATTCAAGTGTTGAAGAAAAATGTTCTCTAACCATATT
TGAAGATGTAAGTGGGTTTGGTGCCTGGCATCGAAGATGGTGTATTCTGTCTGGAAACTGTATCTCTTACTGGATGTACC
CCGATGATGAGAAACGGAAGAATCCCATAGGAAGGATAAATCTGGCCAATTGTACCAGTCGTCAGATAGAACCAGCCAAC
AGAGAATTTTGTGCAAGATGCAACACTTTTGAATTAATTACTGTCCGACCACAAAGAGAAGATGACTGAGAGACGCTTGT
CAGCCAGTGCAGGGACACACTCTGTGTCACCAAGCACTGGCTGTCCGCAGACACCAAGGAAGAGTGGGACCTCTGGATGC
AGAAGCTCAATCAAGTCCTTGTGGACATTCGCCTCTGGCAGCCTGACGCCTGCTACAAGCCTCTCGGGAGG

Alignment

ORF - retro_mluc_880 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 92.32 %
• Parental protein coverage: 87.13 %
• Number of stop codons detected: 5
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  RMQKLAAQRRHWDNDEVTDDTPESSLIPAMPAEDKAASPPKPAEALAT-PVGRRGRLA-NLAAIICSWED
          RMQKLAAQ.RHWDNDEVTDDTPESSLIPAMPAEDKAASPPKPAEALAT.PVGRRGRLA.NLAA.ICSWED
Retrocopy RMQKLAAQQRHWDNDEVTDDTPESSLIPAMPAEDKAASPPKPAEALATTPVGRRGRLA<NLAATICSWED

Parental  DVSLSSAKQNSAPGQPGTTCLSKASSASGASAGINGRSVAQEAACCSPRGGHASLSKAPASRAAAASLPT
          DVSLSSAKQNSAPGQPGTTCLSK.SSASGASAGIN...VAQEAACCSPRGGHASLSKA.ASRAAA.SLPT
Retrocopy DVSLSSAKQNSAPGQPGTTCLSKSSSASGASAGIN---VAQEAACCSPRGGHASLSKAQASRAAAVSLPT

Parental  GAVSSAAKKAASSPVKASISVTNAKNCEVRKPERLQKTPASPLKTEVSKPIGKSAESQTVRPKEEVNRET
          GAVSSA.K.AASSPVKASISVTNAKNCEVRKPERLQKTPASPLKTEVSKPIGKSAESQTVRPK...NRET
Retrocopy GAVSSAVK-AASSPVKASISVTNAKNCEVRKPERLQKTPASPLKTEVSKPIGKSAESQTVRPKK*ANRET

Parental  CLQSHSKDKSTTPVGAGVKPFLERFGERCLERSKDSPTRSTPHRTPVVTPNTKAIQERLLKQNTSSSTTH
          CLQSHSKDK.TTP.GAGVKPFLERFGE.CLER..DSP.RSTPHRTPVVTPNTKAIQERLLKQN.SSSTTH
Retrocopy CLQSHSKDKPTTP-GAGVKPFLERFGEHCLERNEDSPARSTPHRTPVVTPNTKAIQERLLKQNISSSTTH

Parental  VAQRLKQEREKELACLRGRFDKGNLWSAEKGENSRSKQLETKQEIHSQNTPLRKHQVVSNTQSGPVTEKE
          VAQRLKQEREKELACLRGRFDKGNLWSAEKGENSRSKQLET.Q.IHSQN.PLRKHQVVSNT.S.PVTEKE
Retrocopy VAQRLKQEREKELACLRGRFDKGNLWSAEKGENSRSKQLETTQKIHSQNIPLRKHQVVSNTPSHPVTEKE

Parental  KAAGEQTPAQPPSPEPAGFTECEMTKSSPLKITLFLEEEKSLKVTSDPKVEQQTEVERDIEMSVDDEDDI
          KAAGEQT.AQP.SPEPAGFTECEMTKSSPLKITLFLEEEKSLK.TSDP.VEQQT.V....EMSVDD.DDI
Retrocopy KAAGEQTSAQPLSPEPAGFTECEMTKSSPLKITLFLEEEKSLKITSDPTVEQQTKVVHETEMSVDDKDDI

Parental  NSSRVINDIFSAVLQEGELGVARSPEQRGQAGAESGEDQEDALNISSMSLLAPLAQTVGVISPESFASSP
          NSS.VIN.IFS.VLQEGEL.VARSPEQ.GQAGA.SGEDQEDALNISSMSLLAPLAQTVGV.SPESFAS.P
Retrocopy NSSKVINNIFSDVLQEGELDVARSPEQMGQAGA*SGEDQEDALNISSMSLLAPLAQTVGVVSPESFASLP

Parental  RLELKGSSIHDESPKPGKFQRTRVPRAESGDSLGSEDRDLPYSIDAYRSQRIKETDRPSIKQIARKEDAT
          RLELKGSSIHD.SPKPGKFQRT.VPRAES.DS.GSEDRDLPYSID.YRSQRI.ETDRPSIKQIA.KEDAT
Retrocopy RLELKGSSIHDDSPKPGKFQRTHVPRAESDDSIGSEDRDLPYSIDEYRSQRIEETDRPSIKQIAWKEDAT

Parental  SKLEGKRNAEEKSVFPCQVNVKQKMQELNNEINLQQTVIYQASQALNCCVDEEHGKGSLEEAEAERLLLI
          SKLEGKRNAEEKSVFPCQVN.KQKMQELNNEINLQQTVIYQASQALNCC.DEEHG.GSLEEAEAERLLLI
Retrocopy SKLEGKRNAEEKSVFPCQVNFKQKMQELNNEINLQQTVIYQASQALNCCMDEEHGMGSLEEAEAERLLLI

Parental  ATEKRTLLIDELNKLKSEGPQRKNKAGLLSQSEFVPSKGSVTLSEIRLPLKADFVCSTAQKPDAATYSFL
          AT.KRTLLID.LNKLKSEGPQRKNKAGLLSQSEFVPSKGSV.LSEIRLP.KADFVCST.QKPDAATY.FL
Retrocopy ATDKRTLLIDDLNKLKSEGPQRKNKAGLLSQSEFVPSKGSVILSEIRLPFKADFVCSTVQKPDAATYFFL

Parental  IILKAGAENMVATPLASTTTSLNGDALTFSTTYTLEDVSNDFEISIEVYSLVQKKDPSVPDKKKKAYKSK
          IILKAGAENMVATPLASTTTSLNGDALTFSTTYTLEDVSNDFEISIEVYSLV.KKDPSV.DKKKKAYKSK
Retrocopy IILKAGAENMVATPLASTTTSLNGDALTFSTTYTLEDVSNDFEISIEVYSLV*KKDPSVLDKKKKAYKSK

Parental  AITPKRLLTSITTKSSLHSSVMASPGGLHAVRTSNFILVGSYTLSLSSVGNTKFALDKVPFLSPLEGHIY
          AIT.K.LLTSITTK..LHSSVMASP.GLHAV.TSNFILVGSYTLSLSSVGNTKFALDKVPFLSPLEGHIY
Retrocopy AITSK*LLTSITTKRNLHSSVMASPCGLHAVCTSNFILVGSYTLSLSSVGNTKFALDKVPFLSPLEGHIY

Parental  LKIKCQVNSSVEEKGFLTIFEDVSGFGAWHRRWCILSGNCISYWTYPDDEKRKNPIGRINLANCTSRQIE
          LKIKCQVNSSVEEK..LTIFEDVSGFGAWHRRWCILSGNCISYW.YPDDEKRKNPIGRINLANCTSRQIE
Retrocopy LKIKCQVNSSVEEKCSLTIFEDVSGFGAWHRRWCILSGNCISYWMYPDDEKRKNPIGRINLANCTSRQIE

Parental  PANREFCARRNTFELITVRPQREDDRETLVSQCRDTLCVTKHWLSADTKEERDLWMQKLNQVLVDIRLWQ
          PANREFCAR.NTFELITVRPQREDD.ETLVSQCRDTLCVTKHWLSADTKEE.DLWMQKLNQVLVDIRLWQ
Retrocopy PANREFCARCNTFELITVRPQREDD*ETLVSQCRDTLCVTKHWLSADTKEEWDLWMQKLNQVLVDIRLWQ

Parental  PDACYKPLGK
          PDACYKPLG.
Retrocopy PDACYKPLGR

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_880 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000008263	2 retrocopies	retro_mluc_1123, retro_mluc_880 ,