RetrogeneDB ID: retro_mluc_875

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429780:9667459..9668389(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000026382
• Aliases: None
• Description: None

Sequence

>retro_mluc_875
CTAATTGTAAGTGATGATAAAGTATGGAAAGATCAGTTCTACGATGGGAACATTGTGAAAGAACAGAGGTCCAGTAGAGT
TGCATGTTGTAAAATCATGGTTTAGATTGGATCATTAGAAATTTGGGCTCATTGGGGTGAACTGAATTTACTAAGGACAT
TATTAGATTTCATCTACAAGAACATTTCCCCTCAGTAAACGTCAAAGAACCTAATAGATATGTAGATTTTTTTTCCTTTG
TGGTAATCTGAGATGGCACAACTTATTGCCCTGTAGATGTCTGTTGGTTTTGCTCATGGTGTTTGTAATACTGAAAACTT
CAGTTTGTTATCCATTACAATTTACTATGGTCCATTTGGTTTTATGGAGGTCTATAACCCAGATTTTGTACCAAACACAT
CTGATGATAAAAGAAGATATAAAATAAGAAATCAGGCCAATATTGGGATGTTTAATTTGAATAAATTGTTACAAGCTCCA
AACCCATTACTGGATCCAGAGCAAAAGCAGCTTGCTGCTGAGATTCTTGAGGGGTATCCTGTTCTCTATTACACAAGATT
TAGAGAACTGTTCAAAGCCAAATTGGGACTACTTGGAGAAAGGAATGGTGATGAGGATTTGATTGCATTTCTCTTACATC
TCATGGAAAAGACAGAAGCTAATTTTACAATAACATTTAGGCAGCTCAGTGAGATTACTCAAAGCCAGTTACAGCAGCTC
AACATTCGTCAGCAATTCTGGGCACTGAAGATGATTTCAAAACATGAACTCTTTTCTGCCTGGGTGTCCCAGGACCTTTT
GAGACTGAAGAGTAACATGAATGAATCAGATTTTGAAAGAAGAAAAAGACTGATGTCTGCTAATCCTAGATACAGGCTGA
AGAACTGGATGGCGGAATCTGCATTGCGAAAAGCAGAAAGGAATGATTTT

Alignment

ORF - retro_mluc_875 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 83.12 %
• Parental protein coverage: 54.01 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 4

Retrocopy - Parental Gene Alignment:

Parental  LVVSDDEVWRDQFYNGNIVKE-RGAVVLRVAKSWFR-IGSLEILTHYGELDLLRTLLDFI-IQEHFPSVD
          L.VSDD.VW.DQFY.GNIVKE.RG.V.L.V.KSWFR.IGSLEI..H.GEL.LLRTLLDFI..QEHFPSV.
Retrocopy LIVSDDKVWKDQFYDGNIVKE>RGPVELHVVKSWFR<IGSLEIWAHWGELNLLRTLLDFI<LQEHFPSVN

Parental  IKEPNRYVEFFSIVV-SETAQLIALWMSVGFAHGVCNTDNFSLLSITIDYGPFGFMEAYNPDFVPNTSDD
          .KEPNRYV.....VV.SE.AQLIAL.MSVGFAHGVCNT.NFSLLSITI.YGPFGFME.YNPDFVPNTSDD
Retrocopy VKEPNRYVXXXXFVV>SEMAQLIAL*MSVGFAHGVCNTENFSLLSITIYYGPFGFMEVYNPDFVPNTSDD

Parental  ERRYKIGNQANIGMFNLNKLLQALNPILDPRQKQLATQILEGYPVLYYTRFRELFKAKLGLLGERKGDDD
          .RRYKI.NQANIGMFNLNKLLQA.NP.LDP.QKQLA..ILEGYPVLYYTRFRELFKAKLGLLGER.GD.D
Retrocopy KRRYKIRNQANIGMFNLNKLLQAPNPLLDPEQKQLAAEILEGYPVLYYTRFRELFKAKLGLLGERNGDED

Parental  LIAFLLHLMENTEADFTMTFRQLSEITQSQLQELNIPQQFWALKMISKHELFPAWVSQYLLRLKSNMNDS
          LIAFLLHLME.TEA.FT.TFRQLSEITQSQLQ.LNI.QQFWALKMISKHELF.AWVSQ.LLRLKSNMN.S
Retrocopy LIAFLLHLMEKTEANFTITFRQLSEITQSQLQQLNIRQQFWALKMISKHELFSAWVSQDLLRLKSNMNES

Parental  DIERRKRMMTINPRYVLKNWMAESAVQKAERNDF
          D.ERRKR.M..NPRY.LKNWMAESA..KAERNDF
Retrocopy DFERRKRLMSANPRYRLKNWMAESALRKAERNDF

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_875 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000026382	1 retrocopy	retro_mluc_875 ,