RetrogeneDB ID: retro_mluc_790

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429775:8554953..8555846(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000027365
• Aliases: None
• Description: None

Sequence

>retro_mluc_790
CCTATTGCAGATAAAGTGGTGGGCAGGTAGGAGACCCCACGTGCATCCCAGAAGGTCGGCATATTCCACCACAGCAAGAA
AGTCTGTGCCATTGCCACCAGTAGCTCGATCATATGTACACGTGTGGTCATGGCTACCTCAGGGTGTGGGGTGAGAGTGC
TCTGCAGACCAGGAACAAGGCCCCTCAGGTTCAGCTGAACTTTCAGGACCATCAGAATTGTGTCCTCACCTGTAAGGTGT
TCCCCAAAGAGCAGAGCCTGATCACTGGGGGTCTGTCCTGAACCCTGACTCTTTGGGATCTGGCACCCACACCCCATATC
AGGACACAGCTTGCCTCCACAGGCCCCAAAAGCCACTCTCTGGCCATCTCCTCCAATGCCCAGATCTGCTTAGCTTGTTT
CAAAGGATTCATTGAGATTTGGGGTTTGAAGAACTAAATCTTGATCAGGAAGCATGAAGTTCCTGAATATGGGTCCCCAT
GTGTGGATATCATGGGCAATAGGTTTGGCACCAGAGGTGAAGACACCAGCCTGTATTCCTGAGACCTGAAGAGCTACCAG
AAGCTGCAGCAACACAGTCAACACCAAGAGATGCTCAGCATTACCCACGACCCCAGTGAGGAATGGATGTTAGTGGGCCT
GCAAACGAGTGATATCATAATTCTGCACATGCACCGGAAGGAGAAATTTAAGGCCATCATACATAGATACATCTACCACC
ACAACCTCAAGTTTGCCTCCTGTGGGAGCTATTTTGTGACCACGCTGGATGAGTCAATCCACTGCTTAGCTGCACCTTTT
CTACAAAGGTTGTTTCAGGAAGAGAAGTCTACAGAAATTGTGTCCTCCGACAACCAGTATCCAGCCATGGGCTCCAAGAA
CTGGGCTACTGTG

Alignment

ORF - retro_mluc_790 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 73.68 %
• Parental protein coverage: 98.38 %
• Number of stop codons detected: 4
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  PVADEVVVRQRIPRKSWKVGRLCHGKKVCAIAISSST-HHVYTCGHGYIRVWDESALHTWNKAPQAQLNF
          P.AD.VV.R...PR.S.KVG...H.KKVCAIA..SS...H.YTCGHGY.RVW.ESAL.T.NKAPQ.QLNF
Retrocopy PIADKVVGR*ETPRASQKVGIFHHSKKVCAIA-TSSS<DHMYTCGHGYLRVWGESALQTRNKAPQVQLNF

Parental  QDRHNCVLSCKLFPDEQSLITGGVSRTLTLWDLTPTPRIRAQLASAGPICYSLAISSNAQICLACFKGFV
          QD..NCVL.CK.FP.EQSLITGG.S.TLTLWDL.PTP.IR.QLAS.GP...SLAISSNAQICLACFKGF.
Retrocopy QDHQNCVLTCKVFPKEQSLITGGLS*TLTLWDLAPTPHIRTQLASTGPKSHSLAISSNAQICLACFKGFI

Parental  EIWDLQNQILIRKHEVPEYGSRCVDITGNKFWTGGEDTSLYSWDLRSCQKLQQYNLHHEILSIAHDPSEE
          EIW.L.N.ILIRKHEVPEYGS.CVDI.GN.F.T.GEDTSLYS.DL.S.QKLQQ...H.E.LSI.HDPSEE
Retrocopy EIWGLKN*ILIRKHEVPEYGSPCVDIMGNRFGTRGEDTSLYS*DLKSYQKLQQHSQHQEMLSITHDPSEE

Parental  WLLVGLRTSDVIILHTHRKEAFKAVIHKYVHHHNLKFATSGSYFVTTMDESIHCLSAPYLQRLFQEEEST
          W.LVGL.TSD.IILH.HRKE.FKA.IH.Y..HHNLKFA..GSYFVTT.DESIHCL.AP.LQRLFQEE.ST
Retrocopy WMLVGLQTSDIIILHMHRKEKFKAIIHRYIYHHNLKFASCGSYFVTTLDESIHCLAAPFLQRLFQEEKST

Parental  EVLCCDVSSDNQYLVTGSRNCATV
          E.....VSSDNQY...GS.N.ATV
Retrocopy EI----VSSDNQYPAMGSKNWATV

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_790 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000027365	1 retrocopy	retro_mluc_790 ,