RetrogeneDB ID: retro_mluc_73

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429961:176604..176940(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000011516
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000006953
• Aliases: None
• Description: None

Sequence

>retro_mluc_73
TTGTGTGAGTGCCCGTTCACGGTGTGCAGGAGCCTGCACCCCGACCACCTGTGGATCTGGCGGCCCAACGTGTTTGTGGA
CGAGAATGATCGCACCTGGCTGCCCATCATCAACGAGACAGAAAGCAGCCTCCAAGTCCTCATGCGCCAGATCAAGGTCT
CCAGCGGGGAGGCCATGCAGCCCAGCCAGCTGCCCCCCAGCATGCTGCCCCTCATGTGGCAGCTCTACCCTGGCAGGCGG
TACCGCGCCTCCGACTCCAGCTTCTGGCGCATCGTGTACCACATCGAGATCAGTGGCGTCGAGGACATGGTCCTTGAGCA
GCTGCCAGACCCATAG

Alignment

ORF - retro_mluc_73 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 92.79 %
• Parental protein coverage: 99.11 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  LSECPFTACRSLHPDHLWIWRPNVYVDENDRTWLPIIMETESSLQVLMRQIEVSRGEAMQPSRLPPSMLP
          L.ECPFT.CRSLHPDHLWIWRPNV.VDENDRTWLPII.ETESSLQVLMRQI.VS.GEAMQPS.LPPSMLP
Retrocopy LCECPFTVCRSLHPDHLWIWRPNVFVDENDRTWLPIINETESSLQVLMRQIKVSSGEAMQPSQLPPSMLP

Parental  LMWQLYPGRRYRASDSSFWRIVYHIEINGVEDMVLEQLPDP
          LMWQLYPGRRYRASDSSFWRIVYHIEI.GVEDMVLEQLPDP
Retrocopy LMWQLYPGRRYRASDSSFWRIVYHIEISGVEDMVLEQLPDP

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_73 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000006953	2 retrocopies	retro_mluc_368, retro_mluc_73 ,
Ictidomys tridecemlineatus	ENSSTOG00000002570	1 retrocopy	retro_itri_472,