RetrogeneDB ID: retro_mluc_724

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429772:17147831..17149155(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: TPX2
• Ensembl ID: ENSMLUG00000007248
• Aliases: None
• Description: None

Sequence

>retro_mluc_724
TTCAACCTGTCCCAAGGAAAGAAACTTACTCTTGATGAAACAGTTCGTTCCTATGTGCCTTTTGCACAGCAGGTCAAATC
CTTCTATAAATGAACCTCTAATATATATCATTTGAGGAGCAAGAAGGAGGATCTTACTCTGCTACCCCCCAAATCTGCTG
TGGCCAAGATTTCCAGAGACCCACAGACTCCTGTGTTGCAAACCAAACAGCTTGCAAGGAGACCACTGACTCCTGTGACC
TGCAAAAGTGCAGCAGATCAGGAGGCCGAGGACCTTGAGAAACTGCAACAATATAAGTTCAAAGCATGGGAACTTGATCT
CGGAATTCTTGAAGGCGGGCCTATCTTGTCCAAGAAACCACCTGTGAAGCCACACCCTCAGCCTATTGACTTTGATTTGG
AAATTAAGAAAAGAATCCAGGGTTTTAAGTCAAAGAAGAAATCAGAAGAACACTTTGAATTTCATTCCAAACCTTGCCTG
ACTAAGATCTTCGAAGATCCTGTGGATGTTCCTGAAAACAATGTATTTTCAATCACTGCCCCCAAGTCACTGGCCTTTCC
ATTAAAGAACAGAATCTGAATGCCCACCAACATGAGGAGGAGGAGCTGGTAGTGATAAGAACTCGACCCGTATCACATTT
TGGGGAGCCTCTTAAGCCCCATATCCCAGAGGCAAAAACTGTGGAAATATGCCCTTTCTCTTTTGAGTCTCCAGACAAAG
AACGTCAGTTATGGAAGGAGAAGAAAATAAAAGAACTGCAGAAAGGGGAGGTGCCCGAGTTCAAGGCACTTCCTTAGCCT
CATTTTAACACCGTTAACCTGCCAGAGAAGAACGTGAAGAGGGAAACCCTGATTGAGCTTTTCTGCTAGGAGACAGAAAA
AGAGGTGCTGTGAAGGCACAGACTTGGAAGCACCAGCTGGAGGAAGAACTGAAAGAGCAGGAAGAAGCAACTTGCTTCAA
GACTTGTTCAAGCATCATCATCTTCCAGGAGCCCTTTGCTCCCAAGAAAGAGAAAAAGTCCATTGCTGAGGAACTTTTTG
GTTCTCTAGTTCCGGAACCTTTTTAGCTGGTCATTGAGAAGAGAGCCAAGGAGCTGCAAGAGCAGGAGGAGAAAATGCCT
GTGGTAGAAGACCAGAGAGACCAGCAGTTGGAGGAGGCCAGGCAGCAGGAGGAAGAGCAGCAGAAGAAGGAGCTGGACAG
GCTGTGGAAAGAACTGAAGCACAAGGCAAACCCAATATGGAAATACCAGGGTGTGGAGATAAAGTCACATGACCTGCCTC
TGACTGTGCCTGTATCTCCCAAGTTCTCCACTCCATTCCACTGC

Alignment

ORF - retro_mluc_724 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 72.2 %
• Parental protein coverage: 59.43 %
• Number of stop codons detected: 5
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  FNLSQGKKRKFDETASTYVPIAQQVEAFYKGTPNRYHLRSKKDDITLLPTKSTVAKIVTEPQTPVLQTKQ
          FNLSQGKK...DET...YVP.AQQV..FYK.T.N.YHLRSKK.D.TLLP.KS.VAKI...PQTPVLQTKQ
Retrocopy FNLSQGKKLTLDETVRSYVPFAQQVKSFYK*TSNIYHLRSKKEDLTLLPPKSAVAKISRDPQTPVLQTKQ

Parental  RTR----PVTCKSAADLEAEELEKLQQYKFKARELDPRILEGGPILPKKPPVKPPTQPVGFDLEIEKRIQ
          ..R....PVTCKSAAD.EAE.LEKLQQYKFKA.ELD..ILEGGPIL.KKPPVKP..QP..FDLEI.KRIQ
Retrocopy LARRPLTPVTCKSAADQEAEDLEKLQQYKFKAWELDLGILEGGPILSKKPPVKPHPQPIDFDLEIKKRIQ

Parental  ERESKKKSEDEHFEFHSRPCPTKILEDVVGVPEKKLLPITVPKSPAFALKNRIRMPIN-DEEEEPVVIRR
          ...SKKKSE.EHFEFHS.PC.TKI.ED.V.VPE.....IT.PKS.AF.LKNRI.MP.N..EEEE.VVIR.
Retrocopy GFKSKKKSE-EHFEFHSKPCLTKIFEDPVDVPENNVFSITAPKSLAFPLKNRI*MPTN<HEEEELVVIR-

Parental  AQPRAHLGVPFKPQIPEAKTVEICPFSFDSRDKERQLQKEKKIKELQKMEVPKFKAHLLPDFDTVNLPEK
          ..P..H.G.P.KP.IPEAKTVEICPFSF.S.DKERQL.KEKKIKELQK.EVP.FKA...P.F.TVNLPEK
Retrocopy TRPVSHFGEPLKPHIPEAKTVEICPFSFESPDKERQLWKEKKIKELQKGEVPEFKALP*PHFNTVNLPEK

Parental  KVKSVTQTEPFCLETDK-RGALKAQTWKHQLEEELKQQKEATCFKARPNTVIFQEPFVPKKEKKSMTDSL
          .VK..T..E.FC.ET.K.RGA.KAQTWKHQLEEELK.Q.EATCFK......IFQEPF.PKKEKKS....L
Retrocopy NVKRETLIELFC*ETEK<RGAVKAQTWKHQLEEELKEQEEATCFKTCSSIIIFQEPFAPKKEKKSIAEEL

Parental  --SLVQEPFQLATEKRAKERQEMEKKMAEAEAQRVQKLEEVRQQEEEQQKEELARLRKELVHKANPIRKY
          ..SLV.EPF.L..EKRAKE.QE.E.KM...E.QR.Q.LEE.RQQEEEQQK.EL.RL.KEL.HKANPI.KY
Retrocopy FGSLVPEPF*LVIEKRAKELQEQEEKMPVVEDQRDQQLEEARQQEEEQQKKELDRLWKELKHKANPIWKY

Parental  QGVEIKSSDQPLTVPVSPKFSTRFHC
          QGVEIKS.D.PLTVPVSPKFST.FHC
Retrocopy QGVEIKSHDLPLTVPVSPKFSTPFHC

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_724 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000007248	1 retrocopy	retro_mluc_724 ,
Otolemur garnettii	ENSOGAG00000012423	1 retrocopy	retro_ogar_2612,