RetrogeneDB ID: | retro_mluc_698 | ||
Retrocopy location | Organism: | Microbat (Myotis lucifugus) | |
| Coordinates: | GL429771:13602250..13602540(-) | ||
| Located in intron of: | ENSMLUG00000006578 | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | C20orf24 | ||
| Ensembl ID: | ENSMLUG00000009696 | ||
| Aliases: | None | ||
| Description: | chromosome 20 open reading frame 24 [Source:HGNC Symbol;Acc:15870] |
Retrocopy-Parental alignment summary:
>retro_mluc_698
ATGAGTGGCAGGAGGTGGAAGGAGGAGCTGCCTCAGCCTCAGCTGGACAACAGGGTCCTCAAAGTCTCTGTGTGGAGCAA
GGTGCTGCGAAGTGACGCAGCCTGGGAGAACAAGGATGAATTTTTAGATGTGATCTACTGGTTCCGACAGATTATTGCTG
TGGTTCTAGGTGTCATTTGGGGAGTGTTACCATTGCAAGGTTTCTTGGGAATAGAAGGTTCTGCCTGATCATTGCAGGAG
TCTTGTACCTCTACTTCAGCAACTACCTACAGATAGAATATGGTGGCACA
ORF - retro_mluc_698 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 85.15 % |
| Parental protein coverage: | 72.99 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 1 |
Retrocopy - Parental Gene Alignment:
| Parental | MSGGRRKEDPPQPQLANGALKVSVWSKVLRSDAAWEDKDEFLDVIYWFRQIIAVVLGVIWGVLPLRGFLG |
| MSG.R.KE..PQPQL.N..LKVSVWSKVLRSDAAWE.KDEFLDVIYWFRQIIAVVLGVIWGVLPL.GFLG | |
| Retrocopy | MSGRRWKEELPQPQLDNRVLKVSVWSKVLRSDAAWENKDEFLDVIYWFRQIIAVVLGVIWGVLPLQGFLG |
| Parental | IAG-FCLINAGVLYLYFSNYLQIDEEEYGGT |
| I.G.FCLI.AGVLYLYFSNYLQI...EYGGT | |
| Retrocopy | IEG<FCLIIAGVLYLYFSNYLQI---EYGGT |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Myotis lucifugus was not studied using RNA-Seq expression data.
Myotis lucifugus was not studied using ChIP-Seq data.
Myotis lucifugus was not studied using EST data.
Myotis lucifugus was not studied using FANTOM5 data.
retro_mluc_698 was not experimentally validated.
Retrocopy orthology:
Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 2 parental genes, and 2 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000010103 | 1 retrocopy | |
| Myotis lucifugus | ENSMLUG00000009696 | 1 retrocopy |
retro_mluc_698 ,
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