RetrogeneDB ID: retro_mluc_692

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429771:8012591..8012942(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: TRAPPC3
• Ensembl ID: ENSMLUG00000002140
• Aliases: None
• Description: None

Sequence

>retro_mluc_692
GAAGATTTCTTGGCACGGTCAAATGTGGGGAAGTGCCATGACTTTCAGGAAACTGCCAATGTGAAGTTCAAGATGTACTT
GGACATCATTCCAAGTATCACAAATTGGAGTCCAGCTGGTGATGAATTCTCCCTCATTTTGGAAAATAAATCCTTGGTGG
ACTTTGTGAAACTTCCTGATAACCACTCATCCCTTATTTATTCCAGTCTTTTGTGGGGGGTGTTTTGGGGAGCTTTGGAG
GTGGTCCAGATGGCTGTGGAGGCCAAGTTCACACAGAATACCCTGAAAGGAGACAGTGTGACAGAAATCTGGATGAAGTT
AATCAGATGGATTGAGAACAATCTCCCAATT

Alignment

ORF - retro_mluc_692 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 76.03 %
• Parental protein coverage: 67.22 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  EDFLARSNVGKCHDFRETADVIAKVAFKMYLGITPSITNWSPAGDEFSLIMENNPLVDFVELPDSHSSLI
          EDFLARSNVGKCHDF.ET....A.V.FKMYL.I.PSITNWSPAGDEFSLI.EN..LVDFV.LPD.HSSLI
Retrocopy EDFLARSNVGKCHDFQET----ANVKFKMYLDIIPSITNWSPAGDEFSLILENKSLVDFVKLPDNHSSLI

Parental  YSNLLCGVLRGALEMVQMAVEAKFVQDALKGDGVTEIRMRFIRRIEDNLPV
          YS.LL.GV..GALE.VQMAVEAKF.Q..LKGD.VTEI.M..IR.IE.NLP.
Retrocopy YSSLLWGVFWGALEVVQMAVEAKFTQNTLKGDSVTEIWMKLIRWIENNLPI

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_692 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Dasypus novemcinctus	ENSDNOG00000019015	2 retrocopies	retro_dnov_1727, retro_dnov_955,
Macropus eugenii	ENSMEUG00000013169	1 retrocopy	retro_meug_1548,
Myotis lucifugus	ENSMLUG00000002140	1 retrocopy	retro_mluc_692 ,