RetrogeneDB ID: retro_mluc_615

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429769:1327200..1328573(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: FLVCR2
• Ensembl ID: ENSMLUG00000013362
• Aliases: None
• Description: None

Sequence

>retro_mluc_615
GACCTCAGTATGATCAAGGTGAGCAAGCACAGATGGGCAGTGGTCTTGTTGTTTAGTTGCTACTAAATGTGCAATGTCTT
TCAGTGGATCCAGTATGGCTCCATCAGTAATGTCTTCATGAACTTTGACCAGGTCAGTACCTTTGCCATTGACTGACTGT
CCATGTGCTACATGCTAACCTACATCTTTCTACTACTGCTGGTGGCCTGGGTGCTGGAAAAAATTGGCCTGCACACCATT
TCCTTCACCAGATCCGCTCTTAACTGCTTGGGGGCCTGGGTGAAGTTGAGCAGCCTGAAGCCACATCTCTCCGCAGTCAC
TGCACTGGGCCAGGTCATCTGCTCTGTGGCCCAGATCTTCATCCTGGGCATGCCATCCTGAATCACTTCAGTCTGGTTTG
GGGCCAATGAGGTTTCAAAGGCCTGCTCCATAGCTGTCTAAGGCAATCAGCTTAGAATTGCAATTGGTTTCTTGGTACCT
CCCACTTTGGTACCCAATATTGAAGACCAAGACAACTTTACCTATCACATCAGCATCATGTTCTGCATAATAGGAGGTGG
TTCCACTCTTTGTTTTCATCCTTGTCATCATCATATTCAAGGAGAAGCCTAAATATCCCCCCAGCAGGGCCCAATTCCTG
AACTATGCTTTGGAATCCTCTGATGCTTCATACTTAAGTTCCATTGTCCAGCTCTTCAAAAACTTCAACTTCGTGATGCT
TATGATCACCTGTGGTCTGAATGCTGGAGCTTTTTATGTCTTGTCCACTCTGCTGAATTGCATGTTGATATTGCACTACC
CGGTAGAAGAATTGAATGCTGGAAGAATTGGCCTGACCATCATCATTGCAGGAATGCTTGGGGCTGTAATCTCAGGCATC
TGGCTGGATATGTCCAAAACCTATAAGGATACAATCCTAGTGGTCTATAGCATGACTCTGTTTGGCATGGTGGTGTACAC
ATGACCTTGAACCTGGGACACCTGTGGGTAGTGTTCATAACTACTGGCACAATGGGCTTCTTTGTGATTGGTTACCTCCC
ACTGGGATTTGAGTTTGCTGTGGAGCTAACGTACCCAGAATCAGAAGGCATGTCATCTGGCCTCCTCAACGTATCTGCCC
AGGTATTCGGTATCATCTTCACCGTCTCCCAGGGCCAGATTATCAAACACTATGGAACCATGCCTGGGAACAACTTTCTG
TGTGTGTTCCTCACCCTTGGAGCAGCCCTCACTGCATTCATCAAGGCAGATCTCAGAAGGCAGAAAGCAAACAAGGAAAC
TCCTGATAATAAACTTCAGGAGGAAGAGGCGGGGATGAGGAAGAGGAAATCAATATCAGCAAAGCACCCATCACTGTGTC
TGAAGAGCACCTC

Alignment

ORF - retro_mluc_615 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 74.57 %
• Parental protein coverage: 82.73 %
• Number of stop codons detected: 4
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  DLSTIRVSRRRWAVVLVFSCYSMCNAFQWIQYGSINNIFMYFYGVSSFAIDWLSMVYMLTYIPLLLPVAW
          DLS.I.VS..RWAVVL.FSCY.MCN.FQWIQYGSI.N.FM.F..VS.FAID.LSM.YMLTYI.LLL.VAW
Retrocopy DLSMIKVSKHRWAVVLLFSCY*MCNVFQWIQYGSISNVFMNFDQVSTFAID*LSMCYMLTYIFLLLLVAW

Parental  LLEKFGLRNIALMGSALNCLGAWVKLGSLKPHLFPVTVLGQVICSVAQVFILGMPSRIASVWFGANEVST
          .LEK.GL..I....SALNCLGAWVKL.SLKPHL..VT.LGQVICSVAQ.FILGMPS.I.SVWFGANEVS.
Retrocopy VLEKIGLHTISFTRSALNCLGAWVKLSSLKPHLSAVTALGQVICSVAQIFILGMPS*ITSVWFGANEVSK

Parental  ACSIAVFGNQVGIAIGFLVPPVLVPNSKDKDKLAYHISIMFYIIAAVATL-LFILVIIVFKEKPKHPPSR
          ACSIAV.GNQ..IAIGFLVPP.LVPN..D.D...YHISIMF.II....TL..FILVII.FKEKPK.PPSR
Retrocopy ACSIAV*GNQLRIAIGFLVPPTLVPNIEDQDNFTYHISIMFCIIGGGSTL>VFILVIIIFKEKPKYPPSR

Parental  AQSLSYSLVP-ETSYLNPIIRLFKNLNFKLLIITYGLNTGAFYALSTLLNRMVILHFPGEEVNAGRIGLT
          AQ.L.Y.L.....SYL..I..LFKN.NF..L.IT.GLN.GAFY.LSTLLN.M.ILH.P.EE.NAGRIGLT
Retrocopy AQFLNYALESSDASYLSSIVQLFKNFNFVMLMITCGLNAGAFYVLSTLLNCMLILHYPVEELNAGRIGLT

Parental  IVIAGMFGAMISGIWLDRSKTYKETTLVVYVMTLVGMVVYT-LTLPLQHLWIVFITAGTMGFFMTGYLPL
          I.IAGM.GA.ISGIWLD.SKTYK.T.LVVY.MTL.GMVVYT..TL.L.HLW.VFIT.GTMGFF..GYLPL
Retrocopy IIIAGMLGAVISGIWLDMSKTYKDTILVVYSMTLFGMVVYT<MTLNLGHLWVVFITTGTMGFFVIGYLPL

Parental  GFEFAVELTYPESEGISSGLLNVSAQVFGIIFTISQGQIIENYGTMPGNIFLCVFLALGAALTALIKADL
          GFEFAVELTYPESEG.SSGLLNVSAQVFGIIFT.SQGQII..YGTMPGN.FLCVFL.LGAALTA.IKADL
Retrocopy GFEFAVELTYPESEGMSSGLLNVSAQVFGIIFTVSQGQIIKHYGTMPGNNFLCVFLTLGAALTAFIKADL

Parental  RRQKANMEFPENKLQEEEEKVENVEKADNVTSK-APTTLSEEHL
          RRQKAN.E.P.NKLQEEE.......K......K.AP.T.SEEHL
Retrocopy RRQKANKETPDNKLQEEE---AGMRKRKSISAK<APITVSEEHL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_615 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000013362	1 retrocopy	retro_mluc_615 ,