RetrogeneDB ID: retro_mluc_606

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429769:22791123..22791572(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000016846
• Aliases: None
• Description: None

Sequence

>retro_mluc_606
TGGAGCTCTGGTGTGGGATCCTGGACCTAGGGTGATGAAGATTTGGTGCTTGAAAATGAGACTCTGACATTTTTTGAAAC
ATCAAACAGAAAATCAGGAAAGAAATGGATCTTGCCTAAGCCTTCAATCAATGTTTCACCACCTGCTGAACAGCCCATGC
AGAAGGACATTCCAGATTTACCTGAAGAACATCCTGAAAGAGTTGAAGAAGTAGTTACTGTTGCTCTCCAGTGTCCAAGT
GGGAATGTCCTGATAGAAGGATTTTTTAGTCTCGAAGTTCACTGGTTCTATTTGACTTGATGATGAAAATTGGGAACCAC
ACATCCCTCTACAGCCTTTCTACTTCCTTTCCCAGAAGGCCTCTGGAAGTGGAGGGAGGCTGGTCACTGCAGGACATAGG
AATAACTGTGAATACTGTACTCAATGTGGAAGAAAAAGAGCCAAGCAAC

Alignment

ORF - retro_mluc_606 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 66.89 %
• Parental protein coverage: 54.55 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  WKLSHGHKLGGDEDLALETDSQASFETANRKAAKRRNLPKPSTKVSPPAEQPVQKEVSDLPEEPSETAEE
          W....G....GDEDL.LE......FET.NRK..K...LPKPS..VSPPAEQP.QK...DLPEE..E..EE
Retrocopy WSSGVGSWT*GDEDLVLENETLTFFETSNRKSGKKWILPKPSINVSPPAEQPMQKDIPDLPEEHPERVEE

Parental  VVTIALRCPSGSVL-RRRFLKSCSSQVLLDWMVKIGYHTSLYSLSTSFPRIPLEVEGGCSLQDIGITVDT
          VVT.AL.CPSG.VL..RR...S.SS.VL.D.M.KIG.HTSLYSLSTSFPR.PLEVEGG.SLQDIGITV.T
Retrocopy VVTVALQCPSGNVL<DRRIF*SRSSLVLFDLMMKIGNHTSLYSLSTSFPRRPLEVEGGWSLQDIGITVNT

Parental  ILNVEEKEPCN
          .LNVEEKEP.N
Retrocopy VLNVEEKEPSN

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_606 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 7 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000001600	2 retrocopies	retro_amel_1272, retro_amel_1326,
Choloepus hoffmanni	ENSCHOG00000006159	4 retrocopies	retro_chof_1161, retro_chof_1175, retro_chof_1383, retro_chof_1500,
Myotis lucifugus	ENSMLUG00000016846	1 retrocopy	retro_mluc_606 ,