RetrogeneDB ID: retro_mluc_566

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429768:22339404..22339963(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ICMT
• Ensembl ID: ENSMLUG00000009141
• Aliases: None
• Description: None

Sequence

>retro_mluc_566
TATGCCCCCTCCCTGACATTGTTCCAGTATTCTGAATACTTAGCCACAGTGGTCAATAATCCCCAAAATCTGTCCTTGGA
TTTCTTTCTCTGGAATCTCAGTCTGGAGTACACATAGCTAGCTACTCTTTCTTTTCGGATAGAGTTCACACTTCAAAATA
TCTTTTGGCCAGAACCTGAAGCGGATCACCTGACTCAGTGCCACAGGCCTGCTGATGGTCTTTGGAGAATGTCTGAGGAA
AGTGGCCATGTTTACAGCTGTTGCAATTTCAACCACATGGTGCAGAATGGAAAATCAGAAGCCCATAGTCTGGTGACAAA
TGGAGTGTATGCCTGATTCTAGCATCCTTTGGGTGGTTTTACTAGAGTATCAGAACACCAGTGATGCTGTGCAACCCTGT
CTGTGATGTTGGCTATGCTCTGACAGTATGGCAAGTCTCTTGCCGCCAAACAGAAGAGGAAATTTCATTAAGTTCACTTT
TTTTGGAGAGGAGTACCTGGAGTATAAGAAGCAGGTGCCCACAGGCCTGCCTATAATAAAAGGGATCAAGGTGGAGCTA

Alignment

ORF - retro_mluc_566 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 69.74 %
• Parental protein coverage: 85.52 %
• Number of stop codons detected: 5
• Number of frameshifts detected: 5

Retrocopy - Parental Gene Alignment:

Parental  YMCSLSLFHYSEYLVTAVNNPKSLSLDSFLLNHSLEYT-VAALSSWIEFTLENLLWPE-LKQVTWLSTTG
          Y..SL.LF.YSEYL.T.VNNP..LSLD.FL.N.SLEYT..A.LS..IEFTL.N..WPE.LK..T.LS.TG
Retrocopy YAPSLTLFQYSEYLATVVNNPQNLSLDFFLWNLSLEYT*LATLSFRIEFTLQNIFWPE>LKRIT*LSATG

Parental  LLMVVFGECLRKAAMFTAGS-NFNHVVQNEKSETHTLVTSGVYAWFRHPSYVGWF-YWSIGTQVMLCNPI
          LLM.VFGECLRK.AMFTA...NFNH.VQN.KSE.H.LVT.GVYA.F.HP...G.F.Y.SI.T.VMLCNP.
Retrocopy LLM-VFGECLRKVAMFTAVA<NFNHMVQNGKSEAHSLVTNGVYA*F*HP--LGGF<Y*SIRTPVMLCNPV

Parental  CGVGYALTVWRFFRDRTEEEEISL-IH-FFGEEYLEYKKRVPTGLPFIKGVKVEL
          C.VGYALTVW.....R..EEEISL..H.FFGEEYLEYKK.VPTGLP.IKG.KVEL
Retrocopy CDVGYALTVWQ-VSCRQTEEEISL>VH>FFGEEYLEYKKQVPTGLPIIKGIKVEL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_566 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000009141	1 retrocopy	retro_mluc_566 ,