RetrogeneDB ID: retro_mluc_521

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429767:45944882..45945577(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: YIPF5
• Ensembl ID: ENSMLUG00000011143
• Aliases: None
• Description: None

Sequence

>retro_mluc_521
TACAGCATCAATGACCAATGACAGCAGTGCTATGATTATGGAGGAAGAAGAGGACCTTTAGCACACAGTAATCTGACTAT
GACTACTGCAGCAAGCCCGCCTGTCCCTCCAGTCATGATGCAGCCACAGCAGCCCCACACCAGGCGGATTATCCACCAAC
TCAGACATTTACTCCAACAACTCATCGGCCAATCTATGGAAACAACTTTGAGGATGAGCCGTCTTTACTAAAAGAATTAG
AATTAGGTATGGATTTTCACCACATCTGGCAAAAGACACTAAAAGTGTCACATTATTAAAAATGGCAGCTGGCAGCACCA
CGAATGAGACTGCTCTGGTGGGACCCACGGATTTTTCCTGGCCTTTGGAGCTACATGGTTACTGGCTGGCAAAACCCAGT
TTGGCTTTGTGTATGGGGTCCGTGCAATTGGGCGGCTAGGAATGTTTTCTTTATTGAACTTAATGAGTATGACAGGTGTT
TCATTTGGTGTGTGGCAAGTGTCCTTGGATACTATTTTCCTCCCATGATCCTATTTTCCAGCTTTGCGGTGATCTTTTCT
CTGCAATGAATGGTAAGAACCATTCTCACTCCTGGAATTGTTGGATGGTGTCATTTTCCTGCTTCCAAAATTTTTATTTC
TGCATTAGCCACAGAAGGACAGCAACTTCTAGTAGCATATCCTTGCTTTGTTTTA

Alignment

ORF - retro_mluc_521 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 70.12 %
• Parental protein coverage: 90.27 %
• Number of stop codons detected: 3
• Number of frameshifts detected: 7

Retrocopy - Parental Gene Alignment:

Parental  YSIDDQSQQSYDYGGSGGP-YNKQYAGYDYS-QQGRY-VPPEMIQPQQPYTGQI-FQPTQTFTPTTPQPF
          YSI.DQ.QQ.YDYGG..GP....Q...YDY..QQ.R..VPP.M.QPQQP.T..I...PTQTFTPTT..P.
Retrocopy YSINDQ*QQCYDYGGRRGP<FSTQ*SDYDYC<QQARL<VPPVMMQPQQPHTRRI<YPPTQTFTPTTHRPI

Parental  YGNSFEDEPPLLEEL--GINFDHIWQKTLTVLHP-LKVADGSIMNETDLAGPMVFC-LAFGATLLLAGKI
          YGN.FEDEP.LL.EL..G..F.HIWQKTL.V.H..LK.A.GS..NET.L.GP..F..LAFGAT.LLAGK.
Retrocopy YGNNFEDEPSLLKELELGMDFHHIWQKTLKVSHY<LKMAAGSTTNETALVGPTDFS<LAFGATWLLAGKT

Parental  QFGYVYGISAIGCLGMFCLLNLMSMTGVSFG-CVASVLGYCLLPMILLSSFAVIFSLQGMVGVILTAGII
          QFG.VYG..AIG.LGMF.LLNLMSMTGVSFG.CVASVLGY...PMIL.SSFAVIFSLQ.MV..ILT.GI.
Retrocopy QFGFVYGVRAIGRLGMFSLLNLMSMTGVSFG<CVASVLGYYFPPMILFSSFAVIFSLQ*MVRTILTPGIV

Parental  GWCSFSASKIFISALAMEGQQLLVAYPCALL
          GWC.F.ASKIFISALA.EGQQLLVAYPC..L
Retrocopy GWCHFPASKIFISALATEGQQLLVAYPCFVL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_521 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 6 parental genes, and 9 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000010135	1 retrocopy	retro_amel_489,
Dasypus novemcinctus	ENSDNOG00000014497	1 retrocopy	retro_dnov_16,
Felis catus	ENSFCAG00000031350	1 retrocopy	retro_fcat_177,
Myotis lucifugus	ENSMLUG00000011143	3 retrocopies	retro_mluc_2549, retro_mluc_521 , retro_mluc_750,
Otolemur garnettii	ENSOGAG00000001543	2 retrocopies	retro_ogar_2657, retro_ogar_2803,
Tarsius syrichta	ENSTSYG00000008071	1 retrocopy	retro_tsyr_16,