RetrogeneDB ID: retro_mluc_49

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL431216:1513..3385(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000030637
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000014006
• Aliases: None
• Description: None

Sequence

>retro_mluc_49
ATGGCGGCAGCCCCGACGATCTCCAAGGCCGAGGTCCTGAAGCGCTACTTGTCCTGGGCCGATGCTGGCGGCCCCGCGGG
TTCTGAGTTCATTCTCAAGTGTCGCAAAAAGCGGCCTAAGCCTGGCGGTGCCGGCGGCAAGGGAATGCGGATTGTGGATG
ATGATGTGAGCTGGACATCTATCTCCACCACTAAACCCGAAAAGGAAGAAGAGGAAGATGATGGAGATTGGCCTGTGGTG
GCTGAGTTTGTGGATGAGAGGCCAGAAGAGGCAAAGCAGATGGAAACCTTTCGTTCCAGTGCCAAATGGAAGCTTCTGGG
AGGCCACAGTGAGGATCTACCTTCACACAGGCATTCCTGCCATGACTCCCCGGACCCTTCTCCGCCCAGGAGGGTCCGCC
ATGACTCCCCAGATCCTTCTCCACCTGGGAGGGTCCGCCATGACTCCCCGGATCCTTCTCCACATAGGAGGGTCCGCCAT
GACTCCCCAGATCCTTCTCCGCCTAGGAGGGTCTTCCATGACTCCCTGGACCCTTCTCTGCCTAGGAGAGCCCATCATGA
TTCACCGGATCCCTCTCTGCTCAGGAAGCATTATCGTCCTCCAGGTGTATCTCCTCGGAGGGCGCATCACAGTTCCTCAG
ATATTTCTCCTCAGAGAAAGGCCCGTCATGACACCTCTCAACCTAGAAGGACTCTTGAATCCTTGGACACATCAAAGCTC
AGGAGGGCCCGTCATGACTCCCCTGATTCGCCTCCTAATGTTCCTCATTCACTGCACAGAACCAAAAGCAGTAAAGCCCC
AGAAAGAGCCTCTAGCAAACCTTCTCCACATTGGAAGGGGCCAGGAACCGCTCATCCCTCAGTCCCAAAGAACAGCAAGT
ATGAATGTGACTCGGACCTCTCTCCACCACGAAAAAGGCAAGCAACATTTCATTATGGAAATAAACAGCGTGATTCTAAA
GGCTCTTCACCCAGCCGTAGAAAATTTCATACGAGTTCGTCACCTCGAAGACGTCAGAGTCACACGTTGGGCTCTTCCTC
CTACCCAGGAGACAGTCGGAAAGCCTCTGATTCAGACCTTTCTCCTCCGCGGAAGAAACCAAGTTCAAGGCCCCAGGGTT
CTGGTTCAGATCTGTCACCTCCAGGAAATAGACCTGGGCGCCACAGCTCTGATGCTGACCTCTCTCCACCAAGGAGGAAA
CAGAGGGCCGAATCCTCTGATTCTGACCTGTCTCCACCTCGAAGGACTCAGCCTCTGGGGAAGAAGGCTGCACACATGTA
TTCTGGGGCTAAAACTGGGTTGGTGTTAACTGACACACAGCGAGAGCAGCAGGAACTCCAGGAACGGGATCAAGAAACCA
TGGCATTTGAAGCTGAATTCCAATATGCTGAAACCGTATTTCGAGATAAGTCTGGTCGTAAGAGGAATTTGAAACTGGAA
CGTTTCGAGCAAAGGCGAAGAGCAGAGAAGGACTCAAAGAGAGATGAGCTGTATGCCCAGTGGGGAAAAGGGCTTGTCCA
GAGCCGGCAGCAGCAACAAAATGTGGAGGATGCAATAAAGGAAATGCAGAAGCCTCTGGCCCGCTATATTGAGGATGAAG
ATCTGGATCGGATGCTGAGAGAACAAGTAAGGGAGGGGGACCCCATGGCCAACTTTATCAAGAAGAATAAGGCCAAGGAG
AACAAGGATAAGAAAGTGAGACCTCGCTACAGTGGCCCAGCACCTCCTCCCAACAGATTCAATATCTGGCCTGGGTATCG
TTGGGATGGAGTGGACAGATCCAATGGATTTGAACAGAAGCGCTTTGCCCGGCTTGCCAGCAAGAAGGCGGTGGAGGAAC
TTGCCTACAAGTGGAGTGTCGAAGATATGTAA

Alignment

ORF - retro_mluc_49 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 89.56 %
• Parental protein coverage: 77.74 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  SPDPSPPRKVRHDSPDPSPPRRVRHDSPDPSPPRRVRHDSPDPSPPRRVRHDSPDPSPPRRAHHDSPDPS
          S.D....R...HDSPDPSPPRRVRHDSPDPSPP.RVRHDSPDPSP.RRVRHDSPDPSPPRR..HDS.DPS
Retrocopy SEDLPSHRHSCHDSPDPSPPRRVRHDSPDPSPPGRVRHDSPDPSPHRRVRHDSPDPSPPRRVFHDSLDPS

Parental  LLRKHYRPSGVSPRRARHDTPDPSPPRRAHHSSSDISPQRKARNSSPDTCQPRRTLESLDTSKLRRARHD
          L.R.....S........H..P....PRRAHHSSSDISPQRKAR....DT.QPRRTLESLDTSKLRRARHD
Retrocopy LPRRAHHDSPDPSLLRKHYRPPGVSPRRAHHSSSDISPQRKARH---DTSQPRRTLESLDTSKLRRARHD

Parental  SPDSPPNVPHSLHRTKSSKAPERASSKTSPHRKGPGPSHPSVPKNSKYECDSDLSPPRKRQAKFHYGNKQ
          SPDSPPNVPHSLHRTKSSKAPERASSK.SPH.KGPG..HPSVPKNSKYECDSDLSPPRKRQA.FHYGNKQ
Retrocopy SPDSPPNVPHSLHRTKSSKAPERASSKPSPHWKGPGTAHPSVPKNSKYECDSDLSPPRKRQATFHYGNKQ

Parental  HDFKGSSPSRRKFHTSSSPRRRQSHTLGSSSYPGDNRKASDSDLSPPRKKPSSRPQGSDSDLSPPRNRPG
          .D.KGSSPSRRKFHTSSSPRRRQSHTLGSSSYPGD.RKASDSDLSPPRKKPSSRPQGS.SDLSPP.NRPG
Retrocopy RDSKGSSPSRRKFHTSSSPRRRQSHTLGSSSYPGDSRKASDSDLSPPRKKPSSRPQGSGSDLSPPGNRPG

Parental  RHSSDSDLSPPRRKQRAKSSDSDLSPPRRTQPLGKKAAHMYSGAKTGLVLTDIQREQQELQERDQETMAF
          RHSSD.DLSPPRRKQRA.SSDSDLSPPRRTQPLGKKAAHMYSGAKTGLVLTD.QREQQELQERDQETMAF
Retrocopy RHSSDADLSPPRRKQRAESSDSDLSPPRRTQPLGKKAAHMYSGAKTGLVLTDTQREQQELQERDQETMAF

Parental  EAEFQYAETVFRDKSGRKRNLKLERLEQRRRAEKDSKRDELYAQWGKGLVQSRQQQQNVEDAIKEMQKPL
          EAEFQYAETVFRDKSGRKRNLKLER.EQRRRAEKDSKRDELYAQWGKGLVQSRQQQQNVEDAIKEMQKPL
Retrocopy EAEFQYAETVFRDKSGRKRNLKLERFEQRRRAEKDSKRDELYAQWGKGLVQSRQQQQNVEDAIKEMQKPL

Parental  ARYIDDEDLDRMLREQEREGDPMANFIKKNKAKENKDKKVRPRYSGPAPPPNRFNIWPGYRWDGVDRSNG
          ARYI.DEDLDRMLREQ.REGDPMANFIKKNKAKENKDKKVRPRYSGPAPPPNRFNIWPGYRWDGVDRSNG
Retrocopy ARYIEDEDLDRMLREQVREGDPMANFIKKNKAKENKDKKVRPRYSGPAPPPNRFNIWPGYRWDGVDRSNG

Parental  FEQKRFARLASKKAVEELAYKWSVEDM
          FEQKRFARLASKKAVEELAYKWSVEDM
Retrocopy FEQKRFARLASKKAVEELAYKWSVEDM

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_49 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000014006	1 retrocopy	retro_mluc_49 ,