RetrogeneDB ID: retro_mluc_434

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: AAPE02064529:5547..7248(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000016500
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: DHX16
• Ensembl ID: ENSMLUG00000008932
• Aliases: None
• Description: None

Sequence

>retro_mluc_434
GCGGGGCTGGAGCGCTGGGTGCAGGACGAGTTGCACTCGGTGCTGGGGCTGAGCGAGCCGCACCTCGCCCTGTCCCTGAT
CCGCACCGCGCAGCCTTGCGGCTCGGCCCAAGAGTTCCTGCAGCGCCTGCGGGACACCGATACCCTGGACCTTAGCGGGC
CGGCCGCGGACTTCGCCCAGAGACTCTGGCACAAGGTACCTCGGAAGGCGGTGGTGGGAAGGCCAGCTCGGGCAGCCCAG
CCAGAGGCCCGCGCCCTGCCAGAGAAGAACCGATCCCATAAGTTGCTGGAGGACAGCGAGGACAGCAGTGAGGCTGGGAG
CAGTCTCCAGAAGACGTGTAAGCGACCAGAACACCTCAGGAAGAGGAGACTCTGGGAGGAGGAAGAGGAGGAGGCAGAGG
CAGAGGTTCCTGAGAACGGGCAGAAGAAGAAGAAAACAGAAAAGCAAGCGTCGGAGGATGAATGGGAGCGCACAGAGCGA
GAGCGCCTTCAGGACCTGGAGCAGCGCGAGGCCTTCGCTGAGGGGGTCCGGCGGCGGGACAGGGGGCGCACTCGCAGTGT
CCCGGAGCGGCCGGACAGGAAGGCTTGTGAAGAGGCCCAGAAGCGCCTCGGGATGGCTGCGGACGACCGCAAAGCCATGG
TCCCCGAGCTGCGGAAGAAGTCCCGGCGAGAGTACCTGGCCAAGCGAGAGCGAGAGAAGCTGGAAGACCTGGAGGCCGAG
CTGGCGGATGAGGCGTTCCTCTTTGGGGACCTGGAGCTGAGCCAACGCGAGCGGCGGGAGCTCAGATACAAGCGCCGAGT
GCGCGATCTGGCCCGGGAGTACCGGGCGGCCGGCGACCAGGAGAAGCTGGAGGCCACCAGGCGCTACCGCATGCCCGAGG
AGGCCCGAGGACCACCAGCGCCAGCTGTGGATGTGGTGGAGGAGGAATCGGGCGCCCCTGGGGAGGAGCAGCGGCCCCTG
AAATTCGGGGCCCCAGACGCTGCCTCCCAGGAGCCCAGGTATCAGCTGGTGCTCGAGGAAGAGGACACCATCGAGTTTGT
CCGGACGGCTCAGCTGCAGGGCGCGGAGGGGCCCTCGGCTCCACCCGTTTCCACCCGGGCCCCGCAGGAGGAGTGCATGC
AGGCCGTCCGCAGCAGCCTCCCCGTGTTCCCCTTGCACCAGGAGCTCCTGGCTGCCATCACTAGCCACCAGGTCCTCATC
ATCGAGGGCGAGACGGGCTCGGGCAAGACCACCCAGATCCCGCAGTACCTCTGGGAGGAGGGCTATGCCAAGAAGGGCCT
GAAGATTGCCTGCACTCAGCCCAGGAGAGTGGCCGCCATGAGTGTGGCCGCCCGAGTCGCCTGCGAGATGGGTGTGAAGC
TGGGGAACGAGGTTGGCTACAGCATCCGCTTTGAGGACTGCACGTCCGAGCGAACAGTGCTGCGCTACCTGACCGACGGC
ATGCTGCTCCGCAAGTTCCTCTCTGAGCCCGACCTGGCGAGCTACAGTGTGGTGATGGTGGACGAGGCTCACGAGCGGAC
CTTGCACACGGACCTTCTCTTCGGGCTGATCAAAGACGTGGCTCGCTTCCGACCCGAGCTCAAGGTCCTGGTGGCTTCGG
CCACGCTGGACACTGCCCGCTTTTCCGCCTTCTTCGACGACGCCCCCGTCTTCCGAATCCCTGGAGGCAGGTTCCCAGTC
GACATCTTCTACACCAAGGCT

Alignment

ORF - retro_mluc_434 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 77.6 %
• Parental protein coverage: 55.65 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  AALERWVQDELHAVLGLSERHVAQFLIGTARRCSSAEEFVQRLRDTDTLDLGGPARDFALRLWSKVPREA
          A.LERWVQDELH.VLGLSE.H.A..LI.TA..C.SA.EF.QRLRDTDTLDL.GPA.DFA.RLW.KVPR.A
Retrocopy AGLERWVQDELHSVLGLSEPHLALSLIRTAQPCGSAQEFLQRLRDTDTLDLSGPAADFAQRLWHKVPRKA

Parental  VVEKPARAAEREARALLEKNRSYKLLEDSEESSEESVGRAGSRLQKKRKRRKHLRKKRQEEEEEEEEEDS
          VV..PARAA..EARAL.EKNRS.KLLED....SE.S...AGS.LQK..KR..HLRK.R..EEEEEE.E..
Retrocopy VVGRPARAAQPEARALPEKNRSHKLLED----SEDS-SEAGSSLQKTCKRPEHLRKRRLWEEEEEEAE--

Parental  ARGKKTGGSRQQTEKPESEDEWERTERERLQDLEERDAFAERVRQRDKDRTRNVLERSDKKAYEEAQKRL
          A.....G.....TEK..SEDEWERTERERLQDLE.R.AFAE.VR.RD..RTR.V.ER.D.KA.EEAQKRL
Retrocopy AEVPENGQKKKKTEKQASEDEWERTERERLQDLEQREAFAEGVRRRDRGRTRSVPERPDRKACEEAQKRL

Parental  KMAEEDRKAMVPELRKKSRREYLAKREREKLEDLEAELADEEFLFGDVELSQHERRELKYKRRVRDLARE
          .MA..DRKAMVPELRKKSRREYLAKREREKLEDLEAELADE.FLFGD.ELSQ.ERREL.YKRRVRDLARE
Retrocopy GMAADDRKAMVPELRKKSRREYLAKREREKLEDLEAELADEAFLFGDLELSQRERRELRYKRRVRDLARE

Parental  YRAAGEQEKLEATNRYHMPEETRGQPARAVDLVEEESGAPGPGWGPPPGPAGGRRPASQEPKYQLVLEEE
          YRAAG.QEKLEAT.RY.MPEE.RG.PA.AVD.VEEESGAP..G....P...G....ASQEP.YQLVLEEE
Retrocopy YRAAGDQEKLEATRRYRMPEEARGPPAPAVDVVEEESGAP--GEEQRPLKFGAPDAASQEPRYQLVLEEE

Parental  ETIEFVRATQLQGDEEPAAPPSPTQAQQQECIQAVRRSLPVFPFREELLAAIASHQVLIIEGETGSGKTT
          .TIEFVR..QLQG.E.P.APP..T.A.Q.EC.QAVR.SLPVFP...ELLAAI.SHQVLIIEGETGSGKTT
Retrocopy DTIEFVRTAQLQGAEGPSAPPVSTRAPQEECMQAVRSSLPVFPLHQELLAAITSHQVLIIEGETGSGKTT

Parental  QIPQYLFEEGYTKKGLKIACTQPRRVAAMSVAARVAREMGVKLGNEVGYSIRFEDCTSERTVLRYMTDGM
          QIPQYL.EEGY.KKGLKIACTQ...........RVA.EMGVKLGNEVGYSIRFEDCTSERTVLRY.TDGM
Retrocopy QIPQYLWEEGYAKKGLKIACTQXXXXXXXXXXXRVACEMGVKLGNEVGYSIRFEDCTSERTVLRYLTDGM

Parental  LLREFLSEPDLASYSVVMVDEAHERTLHTDILFGLIKDVARFRPELKVLVASATLDTARFSTFFDDAPVF
          LLR.FLSEPDLASYSVVMVDEAHERTLHTD.LFGLIKDVARFRPELKVLVASATLDTARFS.FFDDAPVF
Retrocopy LLRKFLSEPDLASYSVVMVDEAHERTLHTDLLFGLIKDVARFRPELKVLVASATLDTARFSAFFDDAPVF

Parental  RIPGRRFPVDIFYTKA
          RIPG.RFPVDIFYTKA
Retrocopy RIPGGRFPVDIFYTKA

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_434 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000000090	1 retrocopy	retro_mluc_1289,
Myotis lucifugus	ENSMLUG00000008932	2 retrocopies	retro_mluc_434 , retro_mluc_651,
Monodelphis domestica	ENSMODG00000015890	1 retrocopy	retro_mdom_1892,