RetrogeneDB ID: retro_mluc_42

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL431036:62553..64362(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000008860
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000000694
• Aliases: None
• Description: None

Sequence

>retro_mluc_42
ATGACTCCTTGGCCTGAGGTGGAAAATGCCCAGCCCAACCCAGGTGAATACATCAAAGGCATCACGAGCCAACAGCCCCA
CATGGAGGGGAAAGAAAAGGAGACCAACAAAAATGTCACCGGGACCTCTGAAACCAAGATTGAACTTCTGCCATCCCACC
CCACCGCCACACCGGTAGAGGAGCCCACCGACGTAGAAGACCCCTGGGACCTGCCCGAGCTTCAGCACAAGGGGATCAAG
TGGACAGAGAGAGACACCAAAGGGAAGATTCTGTGCATCTTGCAAGGGATCGGGAAGTTCCTTCTGCTACTGGGATTCCT
CTACCTGTTTGTGTGCTCCTTGGATGTCCTCAGCAGTGCCTTCCAGCTGGTTGGAGGGAAAATGGCCGGGAAGTTCTTCA
GCAGCAACTCTATCATGTCCAACCCCCTGGCGGGACTGATGATCGGGGTGCTGGTGACAGCCATGGTGCAAAGCTCGAGC
ACCTCCACATCCATCATCGTCAGCATGGTGGCCTCCTCACTGCTGACGGTGCGGACTGCCATCCCCTTTGTCATGGGAGC
CAACATTGGGACCTCAGTCACCAACACCCTCGTGGCGCTCATGCAGGCAGGAGACCGGAATGTATTCAGAAGGGCCTTTG
CCGGGGCCACCGTCCACGACTTCTTCAACTGGCTCTCCGTGCTGGTGCTCCTGCCCGTGGAGGTCTCCACCCATTACCTG
GAGGTCCTGACCAACCTGATAGTGGAGTCCTTCCATTTCAAAAGCGGAGAAAATGCCCCAGAACTTCTGAAAGTTATCAC
GAATCCTCTTACAAAGCAAATTATCCAGCTGGATAAAAAGGTTATCAACCAGATTGCAATGAATGACCCAGCAGCTCAGA
ACAAGAGTCTGATCAAGATTTGGTGCAAAACTGTGACCAGTGTGACTCAGGTGAATGTCACCATCCCCTCGATTCAGAAC
TGCACCTCCCCCAACCTCTGTTGGGCAAATGGTTTCCACACCTGGACCCTCAAGAACGTGACCCACCGGGAGAATATCGC
CAAGTGCCAGCACCTCTTTGTGAACGCCAACCTCCTGGATCTTGTTGTTGGCATCATCCTGCTGGTCACCTCCCTGTTGG
TGCTCTGTGGCTGTCTGATCATGATCGTCAAGGTCCTGGGCTCTGTGCTCGAGGGGCGAGTAGCTGTTGTCATCAAGAAG
ACCATCAACACTGATTTCCCTTTCCCCTTTTCCTGGCTGACTGGCTACCTGGCTATCTTAGTGGGGGCAGGCATGACCTT
CATCGTGCAGAGCAGCTCGGTGTTCACGTCTACTTTGACCCCACTGATCGGTGTCGGTGTGATAAGCACTGAGAGGGCGT
ATCCACTCACGCTGGGGGCCAACATCGGCACCACCACCACCGCCATCATGGCCGCCTTGGCCAGTCCAGGCAAAACCTTG
AGGAGCTCACTCCAGATCGCCCTGTGCCACTTCTTCTTCAACATCACGGGTATCCTTCTGTGGTACCCAGTCCCGTTCAC
CCGCCTGCCCATCCGCCTGGCCAAGGGGCTGGGCAACGTCTCAGCTAAGTACCGCTGGTTTGCCGTCTTCTACCTGGTCA
TCTTATTCTTCCTGGTCCCGCTGTCCGTGTTTGGCCTCTCGCTGGCTGGGTGGCCAGTGCTGGTGGGCGTGGGGGTGCCC
ATCGTCCTCGTGATCCTTCTGGTGGTGGTGCTCAAGCTCCTGCAGGCCCGCTGCCCCGGCATCCTGCCCAAGGTGCTCCA
GACCTGGAACTTCCTGCCCCTGTGCATGCGCTCGCTGAAGCCCTGGGAC

Alignment

ORF - retro_mluc_42 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 94.07 %
• Parental protein coverage: 87.21 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MAPWPEVENAQPNPGKYIEGITNQQPPTDGKGKETNKIWPDVAGTSETKIELLPSHSTATLIEEPTDTED
          M.PWPEVENAQPNPG.YI.GIT.QQP...GK.KETNK....V.GTSETKIELLPSH.TAT..EEPTD.ED
Retrocopy MTPWPEVENAQPNPGEYIKGITSQQPHMEGKEKETNK---NVTGTSETKIELLPSHPTATPVEEPTDVED

Parental  PWDLPELQHKGIKWTERDTEGKILCILQGIGKFLLLLGFLYLFVCSLDILSSAFQLVGGKMAGKFFSSNS
          PWDLPELQHKGIKWTERDT.GKILCILQGIGKFLLLLGFLYLFVCSLD.LSSAFQLVGGKMAGKFFSSNS
Retrocopy PWDLPELQHKGIKWTERDTKGKILCILQGIGKFLLLLGFLYLFVCSLDVLSSAFQLVGGKMAGKFFSSNS

Parental  IMSNPLAGLMIGVLVTAMVQSSSTSTSIIVSMVASSLLTVRTAIPFVMGANIGTSITNTLVALMQAGDRN
          IMSNPLAGLMIGVLVTAMVQSSSTSTSIIVSMVASSLLTVRTAIPFVMGANIGTS.TNTLVALMQAGDRN
Retrocopy IMSNPLAGLMIGVLVTAMVQSSSTSTSIIVSMVASSLLTVRTAIPFVMGANIGTSVTNTLVALMQAGDRN

Parental  VFRSRAFAGATVHDFFNWLSVLVLLPVEVSTHYLEVLTNLIVDSFHFKSGENAPELLKVITNPLTKQIIQ
          VFR.RAFAGATVHDFFNWLSVLVLLPVEVSTHYLEVLTNLIV.SFHFKSGENAPELLKVITNPLTKQIIQ
Retrocopy VFR-RAFAGATVHDFFNWLSVLVLLPVEVSTHYLEVLTNLIVESFHFKSGENAPELLKVITNPLTKQIIQ

Parental  LDKKVINQIAMNDPAAQNKSLIKIWCKTLTNVTQMNVTVPSIQNCTSPDLCWTNGFHTWTIKNVTHRENI
          LDKKVINQIAMNDPAAQNKSLIKIWCKT.T.VTQ.NVT.PSIQNCTSP.LCW.NGFHTWT.KNVTHRENI
Retrocopy LDKKVINQIAMNDPAAQNKSLIKIWCKTVTSVTQVNVTIPSIQNCTSPNLCWANGFHTWTLKNVTHRENI

Parental  AKCQHLFVNANLLDLVVGIILLVTSLLVLCGCLIMIVKVLGSVLEGRVAVVIKKTINTDFPFPFSWLTGY
          AKCQHLFVNANLLDLVVGIILLVTSLLVLCGCLIMIVKVLGSVLEGRVAVVIKKTINTDFPFPFSWLTGY
Retrocopy AKCQHLFVNANLLDLVVGIILLVTSLLVLCGCLIMIVKVLGSVLEGRVAVVIKKTINTDFPFPFSWLTGY

Parental  LAILVGAGMTFIVQSSSVFTSTLTPLIGVGVISIERAYPLTLGANIGTTTTAIMAALASPGKTLRSSLQI
          LAILVGAGMTFIVQSSSVFTSTLTPLIGVGVIS.ERAYPLTLGANIGTTTTAIMAALASPGKTLRSSLQI
Retrocopy LAILVGAGMTFIVQSSSVFTSTLTPLIGVGVISTERAYPLTLGANIGTTTTAIMAALASPGKTLRSSLQI

Parental  ALCHFFFNITGILLWYPIPFTRLPIRLAKGLGNISAKYRWFAVFYLVILFFLVPLSVFGLSLAGWPVLVG
          ALCHFFFNITGILLWYP.PFTRLPIRLAKGLGN.SAKYRWFAVFYLVILFFLVPLSVFGLSLAGWPVLVG
Retrocopy ALCHFFFNITGILLWYPVPFTRLPIRLAKGLGNVSAKYRWFAVFYLVILFFLVPLSVFGLSLAGWPVLVG

Parental  VGVPIILVILLVVLLKLLQARCPRILPKVFQTWNFLPLCMRSLKPWD
          VGVPI.LVILLVV.LKLLQARCP.ILPKV.QTWNFLPLCMRSLKPWD
Retrocopy VGVPIVLVILLVVVLKLLQARCPGILPKVLQTWNFLPLCMRSLKPWD

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_42 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 3 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Dipodomys ordii	ENSDORG00000016105	1 retrocopy	retro_dord_479,
Myotis lucifugus	ENSMLUG00000000694	1 retrocopy	retro_mluc_42 ,
Ictidomys tridecemlineatus	ENSSTOG00000012971	1 retrocopy	retro_itri_207,