RetrogeneDB ID: retro_mluc_411

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: AAPE02061181:4222..4764(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ZFAND2B
• Ensembl ID: ENSMLUG00000007983
• Aliases: None
• Description: None

Sequence

>retro_mluc_411
ATGGAGTTCCCTGACTTGGGGAAGCATTGTTCAGAAAAGACCTGCAAGCAGCTAGATTTTCTTCCATTGAAATGTGATGT
ATGTGAGCAAGAGTTCTGTAAAGATCATTTTACCTACGTTGCACATAAATGTCCCTTTGCATACAAGAAAGATGTTCAGG
TCCCAGTGTGCCCGCTTTGTAACCGCCCAATCCCAGTAAAGAAGGGAGAGATACCGGATGTGGTGGTTGGTGAGCACATG
GATAGAGATTGTAGATGCCGTCCTGGGAAGAAGGAGAAGGTTTTTACCTTCCGGCGCTCGAAAAAGGGGTGTAAGAAGAA
AGAGATGCTGCCAGTGGCTTGTGACCAGTGTCGTGGCAACTTCTGTATTCAACACAGACATCCTCTGGATCATAGCTGCA
CACACGGGAGCAGAGCCGTCAGCATCGGGGGGTGAGAAGTCCCAGCCGGGGTGCTGGCCTGACGCCTCCCCTGACGAGGG
TAGAGCCAGCTTCCCGCCCACGGAGGGCGGCGAGCAGCCTGGAGCATTGTTCTCTGTCAAGT

Alignment

ORF - retro_mluc_411 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 50.27 %
• Parental protein coverage: 70.54 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  MEFPDLGAHCSEPSCQRLDFLPLKCDACSGIFCADHVAYAQHHCGSAYQKDIQVPVCPLCNVPVPVARGE
          MEFPDLG.HCSE..C..LDFLPLKCD.C...FC.DH..Y..H.C..AY.KD.QVPVCPLCN.P.PV..GE
Retrocopy MEFPDLGKHCSEKTCKQLDFLPLKCDVCEQEFCKDHFTYVAHKCPFAYKKDVQVPVCPLCNRPIPVKKGE

Parental  PPDRAVGEHIDRDCRSDPAQQKRKIFTNKCERSGCRQREMMKLTCERCGRNFCIKHRHPLDHDCSGKGHP
          .PD..VGEH.DRDCR..P...K.K.FT......GC...EM....C..C..NFCI.HRHPLDH.C......
Retrocopy IPDVVVGEHMDRDCRCRPG-KKEKVFTFRRSKKGCKKKEMLPVACDQCRGNFCIQHRHPLDHSCTHGSRA

Parental  TSLA-GLAAISRTQGLASSTSTVPSPSRTLPSSTSPSRATAQS
          .S...G....SR..GL......V...SR......S.......S
Retrocopy VSIG<GVRSPSRGAGLTPPLTRVEPASRPRRAASSLEHCSLSS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_411 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000007983	1 retrocopy	retro_mluc_411 ,