RetrogeneDB ID: retro_mluc_41

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429911:3275746..3276811(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000024904
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000006416
• Aliases: None
• Description: None

Sequence

>retro_mluc_41
ATGAAAATGGAGGAAATGTCTTTGTCTGGCCTGGATAACAGCAAACTAGAGGCCATCGCTCAGGAGATATACGCTGACCT
GGTCGAGGATTCTTGTTTGGGATTCTGCTTTGAGGTACACCGGGCTGTCAAGTGTGGCTACTTCTTCCTGGACGACACGG
ATCCTGATAGCATGAAGGATTTTGAGATCGTGGACCAGCCGGGGTTGGACATCTTTGGACAGGTTTTCAACCAGTGGAAG
AGCAAGGAGTGTGTTTGCCCCAATTGCAGCCGCAGCATTGCCGCTTCCCGCTTTGCTCCCCATCTGGAGAAGTGCCTAGG
AATGGGTCGGAACAGCAGCCGAATCGCCAACCGCCGGATTGCCAATAGCAACAGCATGAACAAGTCTGAGAGTGACCAAG
AGGATAATGATGACATCAATGACAACGACTGGTCCTATGGCTCAGAGAAAAAAGCCAAGAAGAGAAAATCAGACAAGCTA
TGGTATCTCCCATTCCAGAACCCCAATTCCCCTCGAAGATCCAAGTCTTTAAAACACAAAAATGGGGAACTTAGCAATTC
GGATCCTTTTAAGTATAACAGCTCAACTGGGATCAGCTACGAGACCTTGGGACCGGAGGAGCTTCGTAGCCTGCTCACCA
CGCAATGTGGGGTGATTTCTGAACACACCAAGAAGATGTGCACAAGGTCCCTCCGCTGCCCCCAGCATACGGATGAGCAG
CGGCGAGCCGTGCGGATTTACTTCCTTGGACCCTCCGCCGTCCTTCCAGAGGTCGAGAGTTCCCTGGATAATGACAGCTT
TGACATGACTGACAGCCAGGCCCTGATCAGTCGGCTTCAGTGGGATGGCTCCTCTGACCTCTCACCCTCTGATTCAGGCT
CCTCCAAGACGAGTGAGAATCAGGGGTGGGGTCTAGGTACCAACAGCTCTGAGTCACGGAAAACCAAGAAAAAGAAATCC
CATCTGAGCCTGGTAGGGACTGCCTCCGGCCTGGGCTCTAACAAGAAGAAAAAGCCAAAGCCACCGGCACCCCCAACACC
CAGCATCTACGATGACATCAACTGA

Alignment

ORF - retro_mluc_41 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 99.47 %
• Parental protein coverage: 54.47 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  KNPNSPRRSKSLKHKNGELSNSDPFKYNSSTGISYETLGPEELRSLLTTQCGVISEHTKKMCTRSLRCPQ
          .NPNSPRRSKSLKHKNGELSNSDPFKYNSSTGISYETLGPEELRSLLTTQCGVISEHTKKMCTRSLRCPQ
Retrocopy QNPNSPRRSKSLKHKNGELSNSDPFKYNSSTGISYETLGPEELRSLLTTQCGVISEHTKKMCTRSLRCPQ

Parental  HTDEQRRAVRIYFLGPSAVLPEVESSLDNDSFDMTDSQALISRLQWDGSSDLSPSDSGSSKTSENQGWGL
          HTDEQRRAVRIYFLGPSAVLPEVESSLDNDSFDMTDSQALISRLQWDGSSDLSPSDSGSSKTSENQGWGL
Retrocopy HTDEQRRAVRIYFLGPSAVLPEVESSLDNDSFDMTDSQALISRLQWDGSSDLSPSDSGSSKTSENQGWGL

Parental  GTNSSESRKTKKKKSHLSLVGTASGLGSNKKKKPKPPAPPTPSIYDDIN
          GTNSSESRKTKKKKSHLSLVGTASGLGSNKKKKPKPPAPPTPSIYDDIN
Retrocopy GTNSSESRKTKKKKSHLSLVGTASGLGSNKKKKPKPPAPPTPSIYDDIN

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_41 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 5 parental genes, and 17 retrocopies.

Species	Parental gene accession	Retrocopies number
Dasypus novemcinctus	ENSDNOG00000003379	13 retrocopies	retro_dnov_1026, retro_dnov_1144, retro_dnov_1211, retro_dnov_1590, retro_dnov_1902, retro_dnov_2325, retro_dnov_2448, retro_dnov_2497, retro_dnov_2600, retro_dnov_516, retro_dnov_86, retro_dnov_867, retro_dnov_961,
Homo sapiens	ENSG00000087152	1 retrocopy	retro_hsap_4847,
Gorilla gorilla	ENSGGOG00000010959	1 retrocopy	retro_ggor_3023,
Myotis lucifugus	ENSMLUG00000006416	1 retrocopy	retro_mluc_41 ,
Macaca mulatta	ENSMMUG00000029935	1 retrocopy	retro_mmul_820,